View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_6 (Length: 629)
Name: NF18417_low_6
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 5 - 621
Target Start/End: Original strand, 13881647 - 13882261
Alignment:
| Q |
5 |
tatccatctcatcagtcacagcatcttgaagctgaaatagaagtacacgcattaagtgtcagaaagaatgaatggtaccaatgtcataaaaagaggaact |
104 |
Q |
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| T |
13881647 |
tatccatctcatcagtcacagcatcttgaagctgaaatagaagtacatacattaagtgtcagaaagaatgaatggtaccaatgtcataaaaagaggaact |
13881746 |
T |
|
| Q |
105 |
tatggctttaacaatttaacctgtttaacaagtttacgtatcatctttcccaagtttatataagggtataatttagacattataattttagtagagtaca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881747 |
tatggctttaacaatttaacctgtttaacaagtttatgtatcatctttcccaagtttatataagggtataatttagacattataattttagtagagtaca |
13881846 |
T |
|
| Q |
205 |
atcatactgaatgaaaggtaactgtgctaattatacactaattatacaac-------ttgaaactacagagaaaaccaattaaggttttgaaagtcagaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881847 |
atcatactgaatgaaaggtaactgtgctaattatacaataattatacaacttgaaagttgaaactacagagaaaaccaattaaggttttgaaagtcagaa |
13881946 |
T |
|
| Q |
298 |
gggagtgaatgtctagtaagaacataaatggggtacatgctttgccaatggcttcacgtttagaaaatggcaatgacgttccatctccttcaacttcatg |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881947 |
gggagtgaatgtctagtaagaacataaatggggtacatgctttgccaatggcttcacgtttagaaaatggcaatgacgttccatctccttcaacttcatg |
13882046 |
T |
|
| Q |
398 |
cgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgcttctgcatcctcgcaccatcaatagatttgcttccagaa |
497 |
Q |
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| T |
13882047 |
cgcattatccattttcatcagcttcaccttcactttcagccttattatcatg---------ttctgcatcctcgcaccatcaatagatttgcttccagaa |
13882137 |
T |
|
| Q |
498 |
acatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggctt |
597 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13882138 |
acatcagcatttgcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggctt |
13882237 |
T |
|
| Q |
598 |
caccacaaacttcttccacaggtt |
621 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
13882238 |
caccacaaacttcttccccaggtt |
13882261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 613
Target Start/End: Original strand, 16024464 - 16024735
Alignment:
| Q |
354 |
cgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
453 |
Q |
| |
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|||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||||| |||||||||| |
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| T |
16024464 |
cgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattc-cttcagcttcaccttcactttcagccttatcatcatgttct |
16024562 |
T |
|
| Q |
454 |
gc-------tgct--tct-----gca-tcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatga |
538 |
Q |
| |
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| |||| ||| ||| ||||| | ||||| ||||| ||||||||||||||| | ||| |||||| ||||| ||| |||| |||| |
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| T |
16024563 |
ccatcatcatgctcttcttgagagcactcctctc--catcagcagattcacttccagaaacatcaacgtttccagaagcgttttcactgccctctgatga |
16024660 |
T |
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| Q |
539 |
cctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttc |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
16024661 |
cctctgaggactttcttccccttcatcatcagcatctgcataattttctcctctggcttcaccacaaacttcttc |
16024735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 361 - 562
Target Start/End: Original strand, 13883806 - 13884011
Alignment:
| Q |
361 |
aaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgctt |
460 |
Q |
| |
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||||||||||| || |||||||| ||||||| |||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||| || | |
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| T |
13883806 |
aaaatggcaataactttccatcttcttcaacatcatgcgcatcagccatcg-cttcagcttcacctccactttcagccttattatcatgttctccttcaa |
13883904 |
T |
|
| Q |
461 |
ctgcatcctcgcac-----catcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttctt |
555 |
Q |
| |
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| ||| || | |||||| ||||| |||||||||||||||| |||||||||||| ||||| || |||||| |||||||||||||||| |||| |
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| T |
13883905 |
catcatgttctccatcagtcatcaacagattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctctt |
13884004 |
T |
|
| Q |
556 |
ccccttc |
562 |
Q |
| |
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||||||| |
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| T |
13884005 |
ccccttc |
13884011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 614
Target Start/End: Complemental strand, 14397598 - 14397456
Alignment:
| Q |
472 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagc |
571 |
Q |
| |
|
|||||| | |||||| ||||| |||||| || ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| | |
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| T |
14397598 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcattaag |
14397499 |
T |
|
| Q |
572 |
atccatgtagttttctcctctggcttcaccacaaacttcttcc |
614 |
Q |
| |
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|||||| || |||||| ||| |||||||||||||||||||| |
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| T |
14397498 |
atccatataattttcttctcctccttcaccacaaacttcttcc |
14397456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 16022553 - 16022693
Alignment:
| Q |
1 |
ttattatccatctcatcagtcacagcatcttgaagctgaaatagaagtacacgcattaagtgtcagaaagaatgaatggtaccaatgtcataaaaagagg |
100 |
Q |
| |
|
|||||||||||||||||| || || || |||||||||||||||| |||||| | ||| ||||||||||||||||| | ||| | ||||||||||| |
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| T |
16022553 |
ttattatccatctcatcactcgcaacagcttgaagctgaaataggagtacataattgaagggtcagaaagaatgaatgacatcaagcttataaaaagagg |
16022652 |
T |
|
| Q |
101 |
aa-cttatggctttaacaatttaacctgtttaacaagttta |
140 |
Q |
| |
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|| ||||||||||| ||||||||||||||||||||||| |
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| T |
16022653 |
aattttatggctttatgcatttaacctgtttaacaagttta |
16022693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 614
Target Start/End: Complemental strand, 14391312 - 14391173
Alignment:
| Q |
472 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttct-tccccttcatcatcag |
570 |
Q |
| |
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|||||||| |||||| | |||||||||||| | |||||| |||| ||||| ||||||| ||||||| |||||||||||| |||||||||||| |
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| T |
14391312 |
caccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcat--- |
14391216 |
T |
|
| Q |
571 |
catccatgtagttttctcctctggcttcaccacaaacttcttcc |
614 |
Q |
| |
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||||| || |||||| ||||||||| |||||||| ||||||| |
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| T |
14391215 |
-ttccatataattttcttctctggctttaccacaaatttcttcc |
14391173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 453
Target Start/End: Complemental strand, 14393221 - 14393132
Alignment:
| Q |
359 |
agaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
453 |
Q |
| |
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|||||||||||||||| |||||||||||||||| | | |||| | |||| | | ||||||||||||||||||||||||| ||||| ||||| |
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| T |
14393221 |
agaaaatggcaatgacattccatctccttcaac---aggggcattagccatcat--ttagcttcaccttcactttcagccttactatcacgttct |
14393132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 571
Target Start/End: Complemental strand, 14393043 - 14393011
Alignment:
| Q |
539 |
cctctgaggactttcttccccttcatcatcagc |
571 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
14393043 |
cctccgaggactttcttccccttcatcatcagc |
14393011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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