View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_low_8 (Length: 599)

Name: NF18417_low_8
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_low_8
NF18417_low_8
[»] chr8 (11 HSPs)
chr8 (18-363)||(45547376-45547721)
chr8 (385-594)||(45531373-45531586)
chr8 (396-594)||(23136651-23136856)
chr8 (478-594)||(23160795-23160913)
chr8 (470-583)||(8351403-8351518)
chr8 (470-583)||(17890663-17890778)
chr8 (470-583)||(18667056-18667170)
chr8 (470-583)||(35136919-35137034)
chr8 (479-583)||(25064194-25064300)
chr8 (470-558)||(45250800-45250890)
chr8 (470-512)||(19742782-19742824)
[»] scaffold0059 (2 HSPs)
scaffold0059 (396-594)||(66920-67117)
scaffold0059 (396-594)||(75025-75222)
[»] chr3 (7 HSPs)
chr3 (396-594)||(20919454-20919651)
chr3 (396-594)||(20928416-20928613)
chr3 (474-594)||(37198063-37198183)
chr3 (470-588)||(2765786-2765906)
chr3 (396-455)||(37198007-37198069)
chr3 (470-588)||(50246366-50246486)
chr3 (470-583)||(20783815-20783930)
[»] chr6 (3 HSPs)
chr6 (396-594)||(1607703-1607903)
chr6 (416-594)||(11550470-11550650)
chr6 (422-594)||(4856635-4856809)
[»] chr2 (6 HSPs)
chr2 (396-587)||(41747554-41747750)
chr2 (470-583)||(16139518-16139633)
chr2 (470-583)||(20103739-20103854)
chr2 (470-594)||(21120084-21120209)
chr2 (470-555)||(24971948-24972035)
chr2 (400-457)||(16311472-16311529)
[»] chr5 (2 HSPs)
chr5 (416-594)||(9662767-9662947)
chr5 (470-557)||(27588856-27588945)
[»] chr4 (2 HSPs)
chr4 (396-458)||(35648158-35648220)
chr4 (470-583)||(14252977-14253092)
[»] scaffold0155 (1 HSPs)
scaffold0155 (470-594)||(26886-27011)
[»] chr1 (1 HSPs)
chr1 (470-594)||(45915205-45915330)
[»] chr7 (1 HSPs)
chr7 (470-594)||(29494217-29494343)
[»] scaffold0216 (2 HSPs)
scaffold0216 (470-572)||(18275-18379)
scaffold0216 (470-588)||(25465-25585)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 45547721 - 45547376
Alignment:
Q  18 acataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatataacttctgatttttgtttgaggttgacgagaaatcgttcaaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  45547721 acataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatgtaacatctgatttttgtttgaggttgacgagaaatcgttcaaag 45547622  T
Q  118 gatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagtgatattatcgttagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  45547621 gatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagagatattatcattagaa 45547522  T
Q  218 aggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaagatggtttctctga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547521 aggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaagatggtttctctga 45547422  T
Q  318 aaatattaaaataagtgaaaaggaggaagccaatccagaccgtact 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45547421 aaatattaaaataagtgaaaaggaggaagccaatccagaccgtact 45547376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 385 - 594
Target Start/End: Complemental strand, 45531586 - 45531373
Alignment:
Q  385 ccatctctttatcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn----catagaagttt 480  Q
    |||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||             |||||||||||    
T  45531586 ccatctctttctcctccataaacaaattcataagagaaagtattttatgtgttttaaaagcatggaagttttttgtaaaaaaaaaaaaacatagaagttt 45531487  T
Q  481 aatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 580  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531486 aatcacttggttgtagattatggagttgattttattttttgtgtatcttattgttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 45531387  T
Q  581 ctatattcttcgac 594  Q
    ||||||||||||||    
T  45531386 ctatattcttcgac 45531373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 396 - 594
Target Start/End: Original strand, 23136651 - 23136856
Alignment:
Q  396 tcctccataaacaaattcataaaagaaa-----gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcactt 488  Q
    |||||||||||||||||||||||| |||     |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  23136651 tcctccataaacaaattcataaaaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaacaacatagaagtttaatcactt 23136750  T
Q  489 ggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattc 588  Q
    ||||||||||| ||| |||||||| |||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||     
T  23136751 ggttgtagattttggggttgattttattttttgtgtatcttattgttaattgttaattctactttctcaggatcccattgaagagcatgtgtctatatta 23136850  T
Q  589 ttcgac 594  Q
    ||||||    
T  23136851 ttcgac 23136856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 478 - 594
Target Start/End: Complemental strand, 23160913 - 23160795
Alignment:
Q  478 tttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagca 575  Q
    |||||||| ||||||||||||||||| | |||||| |||||||  |||||||| || ||| || | ||||| |||||||||| | | |||||| ||||||    
T  23160913 tttaatcaattggttgtagattatggggctgattttattttttatgtgtatctaattgtttattgctaattctactttctcaaggttccattggagagca 23160814  T
Q  576 tgtgtctatattcttcgac 594  Q
    |||||||  ||||||||||    
T  23160813 tgtgtctccattcttcgac 23160795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 583
Target Start/End: Original strand, 8351403 - 8351518
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  8351403 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcaaggttccatt 8351502  T
Q  568 gaagagcatgtgtcta 583  Q
    | ||||||||||||||    
T  8351503 ggagagcatgtgtcta 8351518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 583
Target Start/End: Complemental strand, 17890778 - 17890663
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||| | | | |||||    
T  17890778 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttcttagggttccatt 17890679  T
Q  568 gaagagcatgtgtcta 583  Q
    | ||||||||||||||    
T  17890678 ggagagcatgtgtcta 17890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 583
Target Start/End: Original strand, 18667056 - 18667170
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||||||||||| ||||||||||||||| | | ||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  18667056 cataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 18667154  T
Q  568 gaagagcatgtgtcta 583  Q
    | ||||||||||||||    
T  18667155 ggagagcatgtgtcta 18667170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 583
Target Start/End: Original strand, 35136919 - 35137034
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||| |||||||||||||||||||| |||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  35136919 catataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 35137018  T
Q  568 gaagagcatgtgtcta 583  Q
    | |||||| |||||||    
T  35137019 ggagagcacgtgtcta 35137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 583
Target Start/End: Original strand, 25064194 - 25064300
Alignment:
Q  479 ttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcat 576  Q
    ||||||||||||||||  ||||||| |||||||| ||||||  | ||||||| || ||| || ||||||  |||||| ||| | | |||||| |||||||    
T  25064194 ttaatcacttggttgtcaattatggggttgattttattttttatttgtatctaattgtttattgttaatgctactttatcagggttccattggagagcat 25064293  T
Q  577 gtgtcta 583  Q
    |||||||    
T  25064294 gtgtcta 25064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 45250890 - 45250800
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcat 558  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||||    
T  45250890 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcat 45250800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 19742782 - 19742824
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgattt 512  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  19742782 catataagattaatcacttggttgtagattatggggttgattt 19742824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 396 - 594
Target Start/End: Complemental strand, 67117 - 66920
Alignment:
Q  396 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 495  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  67117 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 67019  T
Q  496 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 594  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  67018 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 66920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 396 - 594
Target Start/End: Complemental strand, 75222 - 75025
Alignment:
Q  396 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 495  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  75222 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 75124  T
Q  496 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 594  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  75123 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 75025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 396 - 594
Target Start/End: Original strand, 20919454 - 20919651
Alignment:
Q  396 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 495  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20919454 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20919552  T
Q  496 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 594  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  20919553 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 20919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 396 - 594
Target Start/End: Original strand, 20928416 - 20928613
Alignment:
Q  396 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 495  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20928416 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20928514  T
Q  496 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 594  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  20928515 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 20928613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 474 - 594
Target Start/End: Original strand, 37198063 - 37198183
Alignment:
Q  474 gaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagag 573  Q
    |||||||||||||||||||||| ||||||  ||| |||| |||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||    
T  37198063 gaagtttaatcacttggttgtatattatgaggtttattttattttttgtgtatcttattgttaattgttaattctactttctcaggaacccattgaagag 37198162  T
Q  574 catgtgtctatattcttcgac 594  Q
    |||||||||||||| ||||||    
T  37198163 catgtgtctatattattcgac 37198183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 588
Target Start/End: Complemental strand, 2765906 - 2765786
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgt--gtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||  |||||| |  |||||| || |||||| ||| ||| |||||||||| | |||||||    
T  2765906 catagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgattctactttctcagggtcccatt 2765807  T
Q  568 gaagagcatgtgtctatattc 588  Q
    | |||||||||||||| ||||    
T  2765806 ggagagcatgtgtctacattc 2765786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 37198007 - 37198069
Alignment:
Q  396 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttt 455  Q
    |||||||||||||||||||||||| |||   |||||| |||||||||||||||||||||||||    
T  37198007 tcctccataaacaaattcataaaaaaaaaaagtattttctgtgttttaaaagcatggaagttt 37198069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 588
Target Start/End: Complemental strand, 50246486 - 50246366
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||||||||||||||| || |||||| ||||| | ||||||||  |||||  | ||||||| || |||||| ||| ||  |||||||||| ||||| |||    
T  50246486 catagaagtttaatcatttagttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatgctactttctcaggatcctatt 50246387  T
Q  568 gaagagcatgtgtctatattc 588  Q
    | ||||||||| |||||||||    
T  50246386 ggagagcatgtttctatattc 50246366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 583
Target Start/End: Complemental strand, 20783930 - 20783815
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | |  ||||    
T  20783930 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggtttcatt 20783831  T
Q  568 gaagagcatgtgtcta 583  Q
    | ||||||||||||||    
T  20783830 ggagagcatgtgtcta 20783815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 396 - 594
Target Start/End: Complemental strand, 1607903 - 1607703
Alignment:
Q  396 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttg 493  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  1607903 tcctccataaacaaattcataaaaaaaagtattttctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttggttg 1607804  T
Q  494 tagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcga 593  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  1607803 tagattatggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtctatattattcga 1607704  T
Q  594 c 594  Q
    |    
T  1607703 c 1607703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 416 - 594
Target Start/End: Original strand, 11550470 - 11550650
Alignment:
Q  416 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 513  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||           |||||||||||||||| ||||||||||||| ||| ||||||||     
T  11550470 aaaaaaaagtatattctgtgttttaaaagcatggaagttttttgttaaaaaaaaaacatagaagtttaatcatttggttgtagattttggggttgatttt 11550569  T
Q  514 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 594  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  11550570 attttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaggagcatgtgtctatattattcgac 11550650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 422 - 594
Target Start/End: Complemental strand, 4856809 - 4856635
Alignment:
Q  422 aagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttcattttt 519  Q
    |||||| | ||||||||||||||||||||||||||||||           |||| ||||||||||| ||||||||||||| ||| |||||||| ||||||    
T  4856809 aagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacataaaagtttaatcatttggttgtagattttggggttgattttattttt 4856710  T
Q  520 tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 594  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  4856709 tgtgtatcttattgttaatcgttaattctactttctcaggatcccattgtggagcatgtgtctatattattcgac 4856635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 396 - 587
Target Start/End: Original strand, 41747554 - 41747750
Alignment:
Q  396 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttgg 490  Q
    |||||||||||||||||||||||| |||   |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  41747554 tcctccataaacaaattcataaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttgg 41747653  T
Q  491 ttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatatt 587  Q
    ||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  41747654 ttgtagattttggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtctatatt 41747750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 583
Target Start/End: Original strand, 16139518 - 16139633
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||  | ||||||| || ||| || | ||||  |||||||||| | | |||||    
T  16139518 catataagtttaatcacttggttgtagattatggagttgattttcttttttatttgtatctaattgtttattgctaatgctactttctcagggttccatt 16139617  T
Q  568 gaagagcatgtgtcta 583  Q
    | |||| |||||||||    
T  16139618 ggagagtatgtgtcta 16139633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 583
Target Start/End: Original strand, 20103739 - 20103854
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  20103739 catataagattaatcacttggttgtagattatgtggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 20103838  T
Q  568 gaagagcatgtgtcta 583  Q
    | ||||||||||||||    
T  20103839 ggagagcatgtgtcta 20103854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 594
Target Start/End: Original strand, 21120084 - 21120209
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||||||||||||||| ||||||||||||| | | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||| | ||||| |    
T  21120084 catagaagtttaatcatttggttgtagattgtag-gttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcagggtcccact 21120182  T
Q  568 gaagagcatgtgtctatattcttcgac 594  Q
    | |||||||||||||| ||||| ||||    
T  21120183 ggagagcatgtgtctacattctacgac 21120209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 555
Target Start/End: Complemental strand, 24972035 - 24971948
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttct 555  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||    
T  24972035 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttct 24971948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 16311529 - 16311472
Alignment:
Q  400 ccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttt 457  Q
    ||||||| || ||||||||| || ||||||  ||||||||||||||||||||| ||||    
T  16311529 ccataaaaaatttcataaaaaaaggtattttatgtgttttaaaagcatggaagatttt 16311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 416 - 594
Target Start/End: Complemental strand, 9662947 - 9662767
Alignment:
Q  416 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 513  Q
    |||||||||||||| || ||||||||||||||||| |||||||||           |||||||||| ||||||||||||||||||||||  ||||||||     
T  9662947 aaaagaaagtattttctatgttttaaaagcatggatgttttttgtaaacaaaaaaacatagaagttaaatcacttggttgtagattatgtggttgatttt 9662848  T
Q  514 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 594  Q
    ||||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  9662847 attttttatgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcaggtgtctatattattcgac 9662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 557
Target Start/End: Original strand, 27588856 - 27588945
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctca 557  Q
    |||||||||||||||| ||| ||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||||    
T  27588856 catagaagtttaatcatttgattgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttctca 27588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 35648158 - 35648220
Alignment:
Q  396 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagtttttt 458  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  35648158 tcctccataaacaaattcataaaagaaagaattttctgtgttttaaaagcatggaagtttttt 35648220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 583
Target Start/End: Complemental strand, 14253092 - 14252977
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  14253092 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 14252993  T
Q  568 gaagagcatgtgtcta 583  Q
    | ||||||||||||||    
T  14252992 ggagagcatgtgtcta 14252977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 594
Target Start/End: Original strand, 26886 - 27011
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  26886 catagaaatttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 26984  T
Q  568 gaagagcatgtgtctatattcttcgac 594  Q
    | |||||||||||||| ||||| ||||    
T  26985 ggagagcatgtgtctacattctacgac 27011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 594
Target Start/End: Original strand, 45915205 - 45915330
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||||||||||| |||||||||||||||  |||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  45915205 cataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 45915303  T
Q  568 gaagagcatgtgtctatattcttcgac 594  Q
    | |||||||||||||| ||||| ||||    
T  45915304 ggagagcatgtgtctacattctacgac 45915330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 594
Target Start/End: Original strand, 29494217 - 29494343
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgt--gtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||| ||||||||||| ||||||||||||||| |  |||||||  |||||| |  |||||| || |||||| ||| ||  |||||| ||| | |||||||    
T  29494217 catataagtttaatcatttggttgtagattataggattgattttcttttttatttgtatctaattgttaattgttgatgctactttttcagggtcccatt 29494316  T
Q  568 gaagagcatgtgtctatattcttcgac 594  Q
    | |||||||||||||| ||||| ||||    
T  29494317 ggagagcatgtgtctacattctacgac 29494343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 572
Target Start/End: Original strand, 18275 - 18379
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || || ||| ||| ||  |||||||||| | |||||||    
T  18275 catagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgtcaatggttgatgctactttctcagggtcccatt 18374  T
Q  568 gaaga 572  Q
    |||||    
T  18375 gaaga 18379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 588
Target Start/End: Original strand, 25465 - 25585
Alignment:
Q  470 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 567  Q
    |||||||||||||||| ||||||||| |||||   ||||||||  |||||  | ||||||| || |||||| ||| ||  || ||||| | | |||||||    
T  25465 catagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatctaattgttaattgttgatgctattttcttagggtcccatt 25564  T
Q  568 gaagagcatgtgtctatattc 588  Q
    | |||||||||||||| ||||    
T  25565 ggagagcatgtgtctacattc 25585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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