View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_9 (Length: 578)
Name: NF18417_low_9
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 229 - 382
Target Start/End: Complemental strand, 14472246 - 14472093
Alignment:
| Q |
229 |
ccttagggctagagaattgttctattatttgaaaggaggacaagttgattacggcgaagaacatagcaaggcgtgtggacattcgcagtttggaagagtc |
328 |
Q |
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| T |
14472246 |
ccttagggctagagaattgttctattatttgaaaggaggacaagttgattacggcgaagaacatagcaaggcgtgtggacattcgcagtttggaagagtc |
14472147 |
T |
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| Q |
329 |
tatgaacaaggtttggacatttgagatcttcatgttatgtttattgttgtagca |
382 |
Q |
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| T |
14472146 |
tatgaacaaggtttggacatttgagatcttcatgttatgtttattgttgtagca |
14472093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 14472430 - 14472308
Alignment:
| Q |
45 |
cagagattaggtggtttatcatattttgctggagcagagaagaaagatgaaagggttcttgttcctgatctagggtctttaacaagcatctatgataggt |
144 |
Q |
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| T |
14472430 |
cagagattaggtggtttatcatattttgctggagcagagaagaaagatgaaagggttcttgttcctgatctagggtctttaacaagcatctatgataggt |
14472331 |
T |
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| Q |
145 |
aagttcatggaatttttatctta |
167 |
Q |
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| T |
14472330 |
aagttcatggaatttttatctta |
14472308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 14472015 - 14471938
Alignment:
| Q |
470 |
gtatacacaggacattatcctgaatgggatgaggatcatcctattcattttgttgggcattcagctggagcacaggtt |
547 |
Q |
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| T |
14472015 |
gtatacacaggacattatcctgaatgggatgaggatcatcctattcattttgttgggcattcagctggagcacaggtt |
14471938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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