View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_high_10 (Length: 262)
Name: NF18418_high_10
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37162575 - 37162329
Alignment:
| Q |
1 |
atcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162575 |
atcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacatt |
37162476 |
T |
|
| Q |
101 |
cactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162475 |
cactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccacc |
37162376 |
T |
|
| Q |
201 |
agaaacagaggcaacatgttttgcatcaaccacagctccataatagt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162375 |
agaaacagaggcaacatgttttgcatcaaccacagctccataatagt |
37162329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 37136985 - 37136791
Alignment:
| Q |
7 |
cctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgc---acaacattcac |
103 |
Q |
| |
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||||||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||||| || | ||| |||||| |||||| |||| |
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| T |
37136985 |
cctcgaaaaggaccaaactgatcgccatttagatcaagcatttcaacatggccagtttgattgctacatgtgattccttcccatgcacaacaacaatcac |
37136886 |
T |
|
| Q |
104 |
tcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaacca |
198 |
Q |
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||||||| ||||| |||| |||||||| || ||| || | |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37136885 |
tcttactatcccaggtaggcaaaaggtaagtatcttcgacgacaaggcttgccttcaactcaaggagagcatgtctctccttctctatgcaacca |
37136791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 38745606 - 38745408
Alignment:
| Q |
12 |
aaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacattca---ctctta |
108 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| |||||||||||||||||||||| |||||||| | | ||| |||||||||||| ||| |||||| |
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| T |
38745606 |
aaaaggaccaaactgatcactatttagatcaagtatttcaacatggccagtttgattcctacaaccaattccttcccatgcacaacaatcatcactctta |
38745507 |
T |
|
| Q |
109 |
ctgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaaca |
207 |
Q |
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||||||||| || ||||||| || |||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
38745506 |
gtgtcccaagaaggtaaaaggtaagtgtcatccaacacaagacctgacttcaactcaaggagagcatgtctctccttctctatgcaactaccagaaaca |
38745408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37129835 - 37129646
Alignment:
| Q |
1 |
atcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacat- |
99 |
Q |
| |
|
|||||||||| ||||||| || |||| |||||||||| |||| |||||||||| |||||||||||||||||||| | | ||| ||||||||| || |
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| T |
37129835 |
atcttgcctctaaaaggaataacctgatcgccgtttagatcaagcatttcaacatgaccagtttgattgctacaacctattccttcccatgcacagcaac |
37129736 |
T |
|
| Q |
100 |
--tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttct |
187 |
Q |
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| T |
37129735 |
catcacttttactgtcccaagattgcaaaaggttagagtcatccaacacaaagcttgccttcaactcaaggagagcatgtctctccttct |
37129646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 35144858 - 35145052
Alignment:
| Q |
7 |
cctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacattcactct |
106 |
Q |
| |
|
||||||||||||||||||||| || |||| || |||| |||||||||||||||||||||||||||| |||| |||||||| ||||||| || |||| |
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| T |
35144858 |
cctcgaaaaggaccaaactgatcgccatttacatcaagcacttcaacatggccagtttgattgctacaaacgacccctttccattcacaacaatctctct |
35144957 |
T |
|
| Q |
107 |
tactgtcccaagtagacaaaaggttagca----tcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaacc |
197 |
Q |
| |
|
|||| ||||| | |||||| |||| || | || ||| |||||||| |||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
35144958 |
tactctcccacgaagacaataggtaagtaagtgtcttccgccacaaggccagccttcaactgtaggagaccatgtctctccttctctatgcaacc |
35145052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37144133 - 37143884
Alignment:
| Q |
1 |
atcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacat- |
99 |
Q |
| |
|
|||||| ||| |||||||||||||| | |||||||||| ||| |||||||||| |||||||||||||| || || | ||| |||||||||||| |
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| T |
37144133 |
atcttgtctctaaaaggaccaaactaatcgccgtttagatcaagaatttcaacatgaccagtttgattgctgcacgtgattccttcccatgcacaacaac |
37144034 |
T |
|
| Q |
100 |
--tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaacc |
197 |
Q |
| |
|
||| |||||||||||||||||| |||||| || | || ||||| | ||| |||||| ||||||||||||||||||||| |||||| | ||||| |
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| T |
37144033 |
catcaatcttactgtcccaagtaggcaaaagagaagtgttatataacaccatgctttccttcagctcaaggagagcatgtctctcattctctttgcaacc |
37143934 |
T |
|
| Q |
198 |
accagaaacagaggcaacatgttttgcatcaaccacagctccataatagt |
247 |
Q |
| |
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||||||||| || | ||||| ||||||| || | ||||||||| |||||| |
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| T |
37143933 |
accagaaacggaagaaacattttttgcagcagctacagctccagaatagt |
37143884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 3025210 - 3025418
Alignment:
| Q |
12 |
aaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacattca---ctctta |
108 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||| |||||||||||||||||| |||||||||||| | | ||| |||||||||||| ||| |||||| |
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| T |
3025210 |
aaaaggaccaaactgatcaccatttagatcaagtatttcaacatggccagtttcattgctacaaccaattccttcccatgcacaacaatcatcactctta |
3025309 |
T |
|
| Q |
109 |
ctgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacag |
208 |
Q |
| |
|
|||||||||| || ||||||| || | |||||||||||| | | ||||||||||||||| || ||||||||||||||||| |||| ||||||||||| |
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| T |
3025310 |
ctgtcccaagaaggtaaaaggtaagtgttatccaacacaagacctgacttcaactcaaggagtgcttgtctctccttctctatgcaactaccagaaacag |
3025409 |
T |
|
| Q |
209 |
aggcaacat |
217 |
Q |
| |
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| ||||||| |
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|
| T |
3025410 |
aagcaacat |
3025418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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