View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_high_12 (Length: 242)
Name: NF18418_high_12
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 41606584 - 41606803
Alignment:
| Q |
17 |
cagtagcatgatctgaattagaagcagcagctatagtggtagttgtagggttaacagtggaggaatagtcatagtggtggtgagtgaagttactacgagg |
116 |
Q |
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| T |
41606584 |
cagtagcatgatctgaatttgaagcagcagctatagtggtagttgtagggttaacagtggaggaatagtcatagtggtggtgagtgaagttactacgagg |
41606683 |
T |
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| Q |
117 |
gtagaaaacatcaccaaccatcatagggtcataggaataatttggtggaggaaaagtagcagcaccaccatacaaacatggtggttctgctggtagatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41606684 |
gtagaaaacatcaccaaccatcatagggtcataggaataatttggtggaggaaaagtagcagcaccaccatacaaacatggtggttctgctggtagatgt |
41606783 |
T |
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| Q |
217 |
gtagtgtttcttgatgatgt |
236 |
Q |
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|||||||||||||||||||| |
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| T |
41606784 |
gtagtgtttcttgatgatgt |
41606803 |
T |
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