View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18418_high_5 (Length: 348)
Name: NF18418_high_5
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 16017033 - 16016705
Alignment:
| Q |
17 |
tcacttcgctcaactaaacaacagaaaatgtagaagcaagtttagctatttagtatcacctacccgaaattgttcttaataatctttt-atttcacatca |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16017033 |
tcacttcgctcaactaaacaacagcaaatgtagaagcaagtttagctatttagtatcaccaacccgaaattgttcttaataatcttttcatttcacatca |
16016934 |
T |
|
| Q |
116 |
ggttcaagtattaagatatttcatacaataaatctttggttcaagtgttaagctatttcattcaactaaaaacaatgaaggttcgtctgtcttcagagta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
16016933 |
ggttcaagtattaagatatttcatacaataagtctttggttcaagtgttaagctatttccttcaactaaaaacaataaaggtttgtcagtcttcagagta |
16016834 |
T |
|
| Q |
216 |
ataattagtcaagacattgtttcaagcaagcaagaattttatttgaaatagctaagttcaatcatgatgtcaaaatatagaaacaaaatacctcttctgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16016833 |
ataattagtcaagacattgtttcaagcaagcaagaattttatttgaaatggctaagttcaatcatgatgtcaaaatatagaaacaaaatacctcttctgt |
16016734 |
T |
|
| Q |
316 |
tatagacttgatgaattcctttgcttctc |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16016733 |
tatagacttgatgaattcctttgcttctc |
16016705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University