View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_high_6 (Length: 324)
Name: NF18418_high_6
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 24179720 - 24180015
Alignment:
| Q |
19 |
atacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaagaagctgagttggttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
24179720 |
atacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaaaaaatgtgggaaaaaagctgagttgattga |
24179819 |
T |
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| Q |
119 |
atatccaaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttcattatgcaagtcaaggattttatcaacaaagtgtccaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24179820 |
atatccaaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttgattatgcaagtcaaggattttatcaacaaagtgtccaat |
24179919 |
T |
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| Q |
219 |
tctaaatgatgattattgattattgttgtaatgatactgttatgatgtttttattttagtttaataaatataatatgagtgatcttcgtacctatg |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24179920 |
tctaaatgatgactattgattattgttgtaatgatactgttatgatgtttttattttagtttaataaatataatatgagtgatcttcgtacctatg |
24180015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 24189526 - 24189771
Alignment:
| Q |
19 |
atacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaagaagctgagttggttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||| |
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| T |
24189526 |
atacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaaaaaatgtggaaaaaaagctgagttgattga |
24189625 |
T |
|
| Q |
119 |
atatccaaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttcattatgcaagtcaaggattttatcaacaaagtgtccaat |
218 |
Q |
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| T |
24189626 |
atatccaaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttgattatgcaagtcaaggattttatcaacaaagtgtccaat |
24189725 |
T |
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| Q |
219 |
tctaaatgatgattattgattattgttgtaatgatactgttatgat |
264 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24189726 |
tctaaatgatgattattgattattgttgtaatgatattgttatgat |
24189771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 24152463 - 24152674
Alignment:
| Q |
25 |
ttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaagaagctgagttggttgaatatcc |
124 |
Q |
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|||||||| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||| ||||||| || |
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| T |
24152463 |
ttgtttttattggtgggtttgatcctttaaatgattggcaaaagaggtattataattggttgaaaaaatgtggaaaaaaagctgagttgattgaataccc |
24152562 |
T |
|
| Q |
125 |
aaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttcattatgcaagtcaaggattttatcaacaaagtgtccaattctaaa |
224 |
Q |
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|||||||||||||| |||| || ||||||||||||| |||||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||| | |
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| T |
24152563 |
aaacatggttcatgttttttatatttttcctgatttgcctgaatctactcaattgattatgcaagtcaaggatttcatcagcaaagtgtccaattctaga |
24152662 |
T |
|
| Q |
225 |
tgatgattattg |
236 |
Q |
| |
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| |||||||||| |
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| T |
24152663 |
ttatgattattg |
24152674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 24113169 - 24113382
Alignment:
| Q |
19 |
atacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaagaagctgagttggttga |
118 |
Q |
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|||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
24113169 |
atacgcttgtttttattggtggatttgatcctttaaatgattggcaaaagaggtattatgattggttgaagaaatgtgggaaaaaagctgagttaattca |
24113268 |
T |
|
| Q |
119 |
atatccaaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttcattatgcaagtcaaggattttatcaacaaagtgtccaat |
218 |
Q |
| |
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||||||||| ||| |||||| |||| || ||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||| ||||||||||||| |
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| T |
24113269 |
atatccaaatatgattcatgctttttatatttttcctgatttgcctgaatctggtcagttgattatgcaagtcaaggatttcatcagcaaagtgtccaat |
24113368 |
T |
|
| Q |
219 |
tctaaatgatgatt |
232 |
Q |
| |
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|||| || |||||| |
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| T |
24113369 |
tctagattatgatt |
24113382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 24169284 - 24169490
Alignment:
| Q |
19 |
atacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaagaagctgagttggttga |
118 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
24169284 |
atacgcttgtttttattggtggatttgatcctttaaatgattggcaaaagaggtattatgattggttgaagaaatgtgggaaaaaagctgagttgattca |
24169383 |
T |
|
| Q |
119 |
atatccaaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttcattatgcaagtcaaggattttatcaacaaagtgtccaat |
218 |
Q |
| |
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||||||||| ||| |||||| |||| || ||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||| |||||||||| ||| | |
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| T |
24169384 |
atatccaaatatgattcatgctttttatatttttcctgatttgcctgaatctactcagttgattgtgcaagtcaaggagtttgtcaacaaagtctccggt |
24169483 |
T |
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| Q |
219 |
tctaaat |
225 |
Q |
| |
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||||||| |
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| T |
24169484 |
tctaaat |
24169490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 24108044 - 24108233
Alignment:
| Q |
19 |
atacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaagaagctgagttggttga |
118 |
Q |
| |
|
|||||||||||||||| |||||||| || || |||||||||||||||||||||||| |||||||| | || ||| ||| ||||| ||||| |||| |
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| T |
24108044 |
atacgcttgtttttgtgggtgggttggacgggttatatgattggcaaaagaggtattatgaatggttgaaaatatctggaaaaaaagctcagttgattga |
24108143 |
T |
|
| Q |
119 |
atatccaaacatggttcatggttttcatgtttttcctgattttcctgaatctactcagttcattatgcaagtcaaggattttatcaacaa |
208 |
Q |
| |
|
||||||||||||| | ||||||||| ||| |||||| || |||| || || |||| || ||| ||||| |||| |||||||||||||| |
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| T |
24108144 |
atatccaaacatgatgcatggtttttatgcgtttcctaatgttcccgaggcttctcaattgattttgcaaatcaaagattttatcaacaa |
24108233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 24189836 - 24189873
Alignment:
| Q |
267 |
ttttattttagtttaataaatataatatgagtgatctt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24189836 |
ttttattttagtttaataaatataatatgagtgatctt |
24189873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 24214478 - 24214589
Alignment:
| Q |
32 |
tgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaagaagctgagttggttgaatatccaaacatg |
131 |
Q |
| |
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||||||||||| ||| || || | ||||||||||||||||||||||| ||||||| |||| ||| ||||||| | | | ||||||||||||||| |
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| T |
24214478 |
tgttggtgggtgtgacccgttagtagattggcaaaagaggtattatgagtggttgagaaaatctggaaaagaagtgcaactaatagaatatccaaacatg |
24214577 |
T |
|
| Q |
132 |
gttcatggtttt |
143 |
Q |
| |
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||||||| |||| |
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|
| T |
24214578 |
gttcatgctttt |
24214589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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