View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18418_low_1 (Length: 772)

Name: NF18418_low_1
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18418_low_1
NF18418_low_1
[»] chr3 (21 HSPs)
chr3 (16-403)||(4170768-4171154)
chr3 (462-754)||(4170406-4170714)
chr3 (16-306)||(50518760-50519047)
chr3 (18-316)||(37123491-37123778)
chr3 (16-207)||(14194152-14194340)
chr3 (16-96)||(14893260-14893340)
chr3 (16-224)||(25647888-25648093)
chr3 (23-206)||(33143630-33143813)
chr3 (37-121)||(41039462-41039546)
chr3 (26-120)||(14280230-14280323)
chr3 (16-92)||(32010121-32010197)
chr3 (17-312)||(28937400-28937681)
chr3 (213-315)||(14879547-14879649)
chr3 (16-93)||(25594179-25594256)
chr3 (26-120)||(48893034-48893128)
chr3 (38-87)||(1652569-1652617)
chr3 (27-92)||(37998891-37998956)
chr3 (36-92)||(46358073-46358129)
chr3 (106-158)||(46358167-46358219)
chr3 (34-78)||(47946049-47946092)
chr3 (25-72)||(14754963-14755010)
[»] chr2 (27 HSPs)
chr2 (16-311)||(7696077-7696371)
chr2 (16-237)||(13337449-13337660)
chr2 (16-181)||(4974990-4975155)
chr2 (16-181)||(4992898-4993063)
chr2 (16-315)||(37770324-37770612)
chr2 (16-315)||(10173250-10173547)
chr2 (16-254)||(12342992-12343215)
chr2 (16-313)||(34230314-34230610)
chr2 (190-313)||(16952230-16952350)
chr2 (190-313)||(17022895-17023015)
chr2 (190-313)||(17060201-17060321)
chr2 (17-93)||(41113412-41113488)
chr2 (16-95)||(41086475-41086554)
chr2 (23-93)||(4472276-4472346)
chr2 (33-83)||(22884802-22884852)
chr2 (16-82)||(33788296-33788362)
chr2 (19-95)||(29139624-29139700)
chr2 (16-106)||(29997265-29997355)
chr2 (16-95)||(33533415-33533500)
chr2 (36-83)||(27740331-27740378)
chr2 (213-315)||(41086664-41086767)
chr2 (16-82)||(42802427-42802496)
chr2 (16-86)||(25504559-25504629)
chr2 (190-315)||(14106368-14106490)
chr2 (38-73)||(40360652-40360687)
chr2 (17-87)||(1269791-1269861)
chr2 (33-86)||(44594018-44594071)
[»] chr4 (23 HSPs)
chr4 (16-315)||(38636905-38637203)
chr4 (16-315)||(41117639-41117937)
chr4 (107-311)||(49528187-49528390)
chr4 (23-312)||(16832698-16832988)
chr4 (100-305)||(25753293-25753499)
chr4 (16-315)||(19814888-19815190)
chr4 (16-313)||(22810844-22811128)
chr4 (17-88)||(42719494-42719565)
chr4 (16-93)||(28967208-28967285)
chr4 (18-87)||(48098645-48098714)
chr4 (29-95)||(25754206-25754272)
chr4 (148-307)||(19673219-19673377)
chr4 (26-93)||(2061513-2061580)
chr4 (144-315)||(48098444-48098618)
chr4 (16-85)||(46487621-46487690)
chr4 (17-169)||(49747785-49747937)
chr4 (38-86)||(43077307-43077355)
chr4 (19-62)||(9262807-9262850)
chr4 (17-72)||(52009179-52009234)
chr4 (35-93)||(39420726-39420784)
chr4 (25-82)||(35947987-35948044)
chr4 (18-80)||(20632170-20632233)
chr4 (38-76)||(16502053-16502091)
[»] chr5 (23 HSPs)
chr5 (16-311)||(8297583-8297880)
chr5 (19-315)||(26405222-26405515)
chr5 (16-305)||(26045634-26045924)
chr5 (19-208)||(7682770-7682960)
chr5 (34-158)||(30097601-30097725)
chr5 (16-95)||(25992332-25992411)
chr5 (16-186)||(10174921-10175089)
chr5 (25-256)||(14302124-14302356)
chr5 (25-93)||(13953928-13953996)
chr5 (213-315)||(7195109-7195210)
chr5 (24-183)||(33109881-33110035)
chr5 (26-158)||(7194982-7195113)
chr5 (16-97)||(33258560-33258641)
chr5 (13-92)||(5187276-5187355)
chr5 (18-78)||(27713421-27713481)
chr5 (38-86)||(31742504-31742552)
chr5 (16-86)||(8731278-8731348)
chr5 (10-80)||(23426646-23426716)
chr5 (55-120)||(37108105-37108170)
chr5 (36-84)||(24071952-24072000)
chr5 (16-112)||(7391668-7391766)
chr5 (23-93)||(4914177-4914247)
chr5 (44-73)||(34345831-34345860)
[»] chr7 (21 HSPs)
chr7 (17-315)||(24324470-24324767)
chr7 (16-121)||(42532930-42533035)
chr7 (19-140)||(16828774-16828894)
chr7 (16-207)||(33719183-33719375)
chr7 (191-315)||(8745264-8745388)
chr7 (19-120)||(16954795-16954895)
chr7 (25-110)||(39013558-39013643)
chr7 (16-72)||(6726090-6726146)
chr7 (16-72)||(48058343-48058399)
chr7 (26-208)||(1321011-1321192)
chr7 (26-93)||(6716417-6716484)
chr7 (16-87)||(36674809-36674880)
chr7 (25-88)||(44755906-44755968)
chr7 (46-92)||(3478683-3478729)
chr7 (16-81)||(28534175-28534240)
chr7 (16-87)||(8745469-8745539)
chr7 (34-71)||(22567781-22567818)
chr7 (181-315)||(34390075-34390206)
chr7 (16-72)||(47456744-47456800)
chr7 (144-315)||(6716535-6716707)
chr7 (36-83)||(13312180-13312227)
[»] scaffold0050 (1 HSPs)
scaffold0050 (16-315)||(36820-37117)
[»] chr8 (8 HSPs)
chr8 (17-184)||(17656408-17656575)
chr8 (26-260)||(10248246-10248482)
chr8 (17-92)||(12197747-12197822)
chr8 (17-92)||(12442175-12442250)
chr8 (215-315)||(17656872-17656972)
chr8 (54-93)||(2273760-2273799)
chr8 (32-93)||(8862308-8862370)
chr8 (33-83)||(9831691-9831741)
[»] chr1 (27 HSPs)
chr1 (31-169)||(34775129-34775267)
chr1 (19-120)||(27102489-27102589)
chr1 (16-315)||(31290692-31290989)
chr1 (16-95)||(9313011-9313090)
chr1 (36-208)||(32882583-32882757)
chr1 (24-165)||(46768437-46768579)
chr1 (23-243)||(11439698-11439919)
chr1 (17-95)||(4431006-4431084)
chr1 (17-245)||(10785133-10785359)
chr1 (24-86)||(32863225-32863287)
chr1 (16-88)||(376477-376549)
chr1 (218-313)||(41126348-41126443)
chr1 (126-313)||(16577374-16577560)
chr1 (16-83)||(37200485-37200552)
chr1 (25-120)||(52278589-52278682)
chr1 (19-81)||(17033939-17034001)
chr1 (16-92)||(9557241-9557317)
chr1 (33-92)||(38544404-38544463)
chr1 (47-108)||(16149093-16149155)
chr1 (36-82)||(46603705-46603751)
chr1 (37-86)||(50588964-50589014)
chr1 (17-93)||(49820488-49820565)
chr1 (35-86)||(19598990-19599042)
chr1 (16-84)||(41126122-41126190)
chr1 (16-51)||(7451932-7451967)
chr1 (17-92)||(27905766-27905840)
chr1 (37-84)||(42374526-42374573)
[»] chr6 (8 HSPs)
chr6 (16-315)||(20701468-20701773)
chr6 (16-158)||(15120273-15120415)
chr6 (16-95)||(3880283-3880362)
chr6 (155-315)||(3880405-3880568)
chr6 (23-120)||(6860338-6860436)
chr6 (16-84)||(17278133-17278201)
chr6 (38-78)||(26534424-26534464)
chr6 (16-70)||(13423718-13423772)
[»] scaffold0063 (1 HSPs)
scaffold0063 (17-315)||(58238-58537)
[»] scaffold1613 (1 HSPs)
scaffold1613 (33-92)||(683-742)
[»] scaffold1384 (1 HSPs)
scaffold1384 (41-184)||(1347-1494)
[»] scaffold0119 (1 HSPs)
scaffold0119 (17-87)||(41841-41911)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 4171154 - 4170768
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171154 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 4171055  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
    ||||||||  | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4171054 aaaaaatatacgtcatcacctaaaatagactccttcacgaaaatgaccattgtataaatgatatccaaccatccatcgtcactactcacccccttctaaa 4170955  T
Q  216 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 315  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| | |||||| |||||||||||||| ||||| |||| ||||||||||||||| |||    
T  4170954 aacacccctcaaagtaaaactctcagtccttaacaccaaagctgagccacatctccaaagctcctaccc-aaagatcattaagcttccaccacctcccga 4170856  T
Q  316 atcgttttcattaattaagttcatctatttctgttaatttttatcctcaatatctaagggggaccaacattgcaggtgatccaccaaa 403  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  4170855 ctcgttttcattagttaagttcatctatttctgttaatttttatcctcaatgtctaagggggaccaacattgcaggtgatccatcaaa 4170768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 462 - 754
Target Start/End: Complemental strand, 4170714 - 4170406
Alignment:
Q  462 aaagacatccattagggcatgtatgtctaatagatctaataatgcatcaccaatacataatttttgtttacctttcttcatcctttcgtgaaaaaattaa 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  4170714 aaagacatccattagggcatgtatgtctaatagatctaataatgcatcaccaatatgtaatttttgtttacctttcttcctcctttcgtgaaaaaattaa 4170615  T
Q  562 tatgatctaatgaagtctttggtgacaaaagtgaatgaaaatgaactac----------------taaatgtaacaacacttaatatggagcttgttcat 645  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||                |||||||||||||||||||||||||||||||||||    
T  4170614 tatgatctaatgaagtctttggtgacaaaagtgaatgaatatgaactacattacgttaagcgaactaaatgtaacaacacttaatatggagcttgttcat 4170515  T
Q  646 catttacacattttaaatatcacttggaaatggaataaagtagctcatttgatcgtttctttgtttgtttgacgtttattgagcaataggattctcaaga 745  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4170514 catttacacattttaaatatcacttggaaatggaataaagtagctcatttgatagtttctttgtttgtttgacgtttattgagcaataggattctcaaga 4170415  T
Q  746 cggataatt 754  Q
    |||||||||    
T  4170414 cggataatt 4170406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 50518760 - 50519047
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |  ||||||| |||||||     
T  50518760 cagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacccatgaggaccacaccca- 50518858  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
    | ||||||| | ||| ||||||||| ||||||||||||| | |  ||||||||| ||| |||||| ||| ||| |||||||||||||||| ||    |||    
T  50518859 acaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaaaaacgatatctaacgatccatcgtcactactcacctccaaagaaa 50518957  T
Q  216 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacc 306  Q
    ||||||||| |||   ||| ||   |||||||||||||||| ||| | |||  |  ||| |||||| || |||||||||||||||||||||    
T  50518958 aacacccctaaaaaataaattcctcgtcctgaacaccaaagctgagccaca-atcaaaaactcctaaccaaaagaccattcagcttccacc 50519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 37123778 - 37123491
Alignment:
Q  18 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaa 117  Q
    ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||           |||| ||||||||||||      
T  37123778 gagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaaataaacaccc-----------ttgaagacaacacccac-c 37123691  T
Q  118 aaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaa 215  Q
    ||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||| ||| ||||||||  |||| || | ||||||||||||| ||    |      
T  37123690 aaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcaccgccaaagatg 37123591  T
Q  216 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 315  Q
    |||||||||| || | ||||||||||||| ||||| ||||| ||| | ||||| | ||||||| |  | |||||| ||| ||||||||||||||| ||||    
T  37123590 aacacccctccaaattaaactctcagtccagaacatcaaagctgagccacatc-gaaaagctcatgtctgaaagatcatacagcttccaccacctatcga 37123492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 14194340 - 14194152
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca-tcattgaggacaacaccca 114  Q
    |||||||| ||||||||||||| |||||||||||| | | ||||||||||||||| | ||||||||||| |||||||||| ||| ||||||| |||||||    
T  14194340 cagagaccagtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaacactca-tgaggaccacaccca 14194242  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccc 207  Q
    |  ||||||| | ||| || |||||| ||||||| ||||| ||||  |||||| || || |||||||||||||| ||||||||||||||||||    
T  14194241 c-caaaatacacgtcaccacctaaaacagactccatcacg-aaatcgccactgaat-aacgatatccaaccatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 14893340 - 14893260
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacat 96  Q
    ||||||| |||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  14893340 cagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaacat 14893260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 25648093 - 25647888
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||| |||||||||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||    ||||||| ||||||||    
T  25648093 cagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaaacacacatgaggaccacacccac 25647994  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
     ||| | ||   ||| ||  ||||| | ||||| ||||| |||  ||||||| | ||| |||||||||||||| ||| |||||||||||||||   ||||    
T  25647993 caaata-acatgtcaccacataaaacatactccatcacg-aaaccaccactg-aaaaacgatatccaaccatccatcatcactactcacccccaaataaa 25647897  T
Q  216 aacacccct 224  Q
    |||||||||    
T  25647896 aacacccct 25647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 33143630 - 33143813
Alignment:
Q  23 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 122  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||  |   ||||| |||| |||| | |||     
T  33143630 cggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacacccgaaaa-aaacacccaaaaaactcccaagaggataacatccaccataaa- 33143727  T
Q  123 acgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa--ccatctatcgtcactactcaccc 206  Q
    || | ||| || |||||| | |||||||||||||||  ||||||| | ||| |||||||||  |||||  ||||||||||||||||    
T  33143728 acacgtcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 41039546 - 41039462
Alignment:
Q  37 atacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaa 121  Q
    ||||||| |||| || || ||||||||||||||||| |||||||||||||||||||||| |  ||| |||||||||||| |||||    
T  41039546 atacaaagaaaatgcatcatatataggcggaacaccagaaaataaacaccctaaaaacacccgtgaagacaacacccaccaaaaa 41039462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 14280230 - 14280323
Alignment:
Q  26 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 120  Q
    ||||||||| ||||||||  ||||||| ||||||||||||||||||| |||| ||||||| || |||| |||  |||||||||||||||| ||||    
T  14280230 tgaaactgataatacaaattaaaggcgccgtatataggcggaacacccgaaagtaaacactctgaaaatatc-ctgaggacaacacccactaaaa 14280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 32010197 - 32010121
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    |||||| ||||||  | |||||||||| | ||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  32010197 cagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatacctgaaaataaacaccttaaaa 32010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 28937400 - 28937681
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 116  Q
    |||||||||||||| ||||||||||||      ||| |||||||| |||||||||| |||||||||||||||||||||| |    | ||||||||||||     
T  28937400 agagaccggtgaaattgagaatacaaa------gcgccgtatataagcggaacacccgaaaataaacaccctaaaaacacccca-atgacaacacccacc 28937492  T
Q  117 aaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttct-a 213  Q
    ||||       ||  || |||||| |||| ||||||||||| ||||||||||| ||| ||||||||  |||| | |||| ||||||||||| ||   | |    
T  28937493 aaaa-------tc--cacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaagtaa 28937583  T
Q  214 aaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 312  Q
    ||||||||||| |||   ||||||  || |||||||| ||||| ||| | |||||   ||||||||| || |||| | |||||||||||||||| ||||    
T  28937584 aaaacacccctaaaaaacaaactcctagacctgaacatcaaag-tgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 28937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 14879649 - 14879547
Alignment:
Q  213 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 312  Q
    |||||||||||||||| | |||||| ||| | |||||||||||   || | ||||| | |||||||||| | |||||| |||| ||||||||||||||||    
T  14879649 aaaaacacccctcaaaattaaactcccagacttgaacaccaaacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T
Q  313 cga 315  Q
    |||    
T  14879549 cga 14879547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 25594179 - 25594256
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    |||||| ||||||  | ||||||| ||| |||| ||||||||||||||||||||||| |||| |||||||| ||||||    
T  25594179 cagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaagtaaacaccataaaaa 25594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 48893034 - 48893128
Alignment:
Q  26 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 120  Q
    |||||||||||||||||||||| |  | |||||||| | |||||| | ||||||||||||  |||||||| |  ||| |||||||||||| ||||    
T  48893034 tgaaactgagaatacaaacaaacgatgccgtatataagaggaacatccgaaaataaacactttaaaaacacccctgaagacaacacccaccaaaa 48893128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 1652569 - 1652617
Alignment:
Q  38 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 87  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  1652569 tacaaactaaaggcgtcgtatataggcggaacacccg-aaataaacaccc 1652617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 37998891 - 37998956
Alignment:
Q  27 gaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    |||||||||||||||||||||| | | |||||||||||||||   | ||||||||||||| |||||    
T  37998891 gaaactgagaatacaaacaaaatgtgccgtatataggcggaatgtccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 46358073 - 46358129
Alignment:
Q  36 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    ||||||||| |||| ||  ||||||||||| |||||||||||||||||||| |||||    
T  46358073 aatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaa 46358129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 46358167 - 46358219
Alignment:
Q  106 caacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 158  Q
    ||||||||||||| ||||  |||||||| |||||| |||||||||||||||||    
T  46358167 caacacccacaaagaataaacatcatcacctaaaacagactccttcacgaaaa 46358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 47946092 - 47946049
Alignment:
Q  34 agaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 78  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  47946092 agaatacaaacgaa-ggcgtcgtatataggcggaacacctgaaaa 47946049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 14754963 - 14755010
Alignment:
Q  25 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 72  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||||||    
T  14754963 gtgaaattgagaatacaaactaaaggcgccgtacataggcggaacacc 14755010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 4e-68; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 7696371 - 7696077
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    ||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||  |||||||||||| |||||||| |   |||||||||||||||    
T  7696371 cagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacacccaaaaataaacaccttaaaaacacccccgaggacaacacccac 7696272  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
     |||| ||| ||||| || |||||||| ||||||||||||||| ||||| |||| ||||||||| ||||||   ||||||||||||||| |||||  |||    
T  7696271 caaaa-tacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattcaaccactcatcgtcactactcactcccttagaaa 7696173  T
Q  216 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 311  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||| | |||||  |||| |||||| |||||||| ||||||||||||||||||||    
T  7696172 aacacccctaaaaataaaactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctc 7696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 13337660 - 13337449
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  13337660 cagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacacccctgaggacaacacccac 13337561  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
       || ||| ||||  || |      ||||||| ||||||||| |||||| ||| ||| ||||||| | || | |||||||||||||||||||||  |||    
T  13337560 -ttaattacacatcgccacc------agactccctcacgaaaa-gaccacggta-aaacgatatcc-atcacccatcgtcactactcacccccttagaaa 13337471  T
Q  216 aacacccctcaaagtaaaactc 237  Q
    ||||||||||||| ||||||||    
T  13337470 aacacccctcaaaataaaactc 13337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 4975155 - 4974990
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 114  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4975155 cagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacaccca 4975056  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 181  Q
    |  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4975055 c-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 4993063 - 4992898
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 114  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4993063 cagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacaccca 4992964  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 181  Q
    |  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4992963 c-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 37770324 - 37770612
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||| |||||||  |||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||| || |||||| | |||||||    
T  37770324 cagagatcggtgaatatgagaatacaaacaa---gcgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggataccacccac 37770419  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttcta 213  Q
      ||||| | | ||| || |||||| |||||||||||||||||  |||||| ||        |||||  |||| |  |||||||||||| |||||    |    
T  37770420 -caaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccactata--------atccaacaccacccgtcgtcactactcgcccccaaaga 37770510  T
Q  214 aaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 313  Q
    ||||  ||||||||| | |||||| ||| ||||||||||||||  || | || || | ||||||| || | |||||| ||||||||||||| ||||||||    
T  37770511 aaaaaccccctcaaaattaaactcacagacctgaacaccaaagccgagccacctcagaaaagctcatatctgaaagatcattcagcttccaacacctctc 37770610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 10173250 - 10173547
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacaccca 114  Q
    |||||| |||||||||  | ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| | | |  ||||||||| |||||    
T  10173250 cagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaataccca 10173349  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttct 212  Q
       |||||||   |||    |||||| ||||  ||||| ||||| ||| |||||| ||| ||||| ||  ||||   |||||||||||||||||    |     
T  10173350 -tcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcaccc----ca 10173444  T
Q  213 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 312  Q
    || || || ||||||| | |||||||||||||| |||||||||| ||| | ||||| | ||||||| ||  | ||||| |||||| ||||||||||||||    
T  10173445 aagaatactcctcaaaattaaactctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctct 10173544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 12343215 - 12342992
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||||||  |||| ||||||||||||| |||| |||| || | |||||||||||| |||||||||||||||            |||||||||| |||     
T  12343215 cagagaccgacgaaattgagaatacaaactaaagacgtcttacaaaggcggaacacccgaaaataaacaccct------------gaggacaacatccat 12343128  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
     |||| ||| | ||| || |||||| ||||||||||||||||| |||| ||||| ||| ||||||||||||   |||||||||||||||||||  | | |    
T  12343127 caaaa-tacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaaccactcatcgtcactactcaccccc--caaga 12343031  T
Q  216 aacacccctcaaagtaaaactctcagtcctgaacaccaa 254  Q
    |||||||||||||   |||||| ||||||| ||||||||    
T  12343030 aacacccctcaaaaataaactcccagtcctcaacaccaa 12342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 34230610 - 34230314
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||||  |||||||||| | |||||||| |  | || |||||| ||||    
T  34230610 cagagatcggtgaa-ctgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaaacaccccttagaacaacatccac 34230512  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacc-cccttct 212  Q
      ||||||| | ||| ||||| ||| |||||| | |||||||| ||||||| || ||| ||||||||||  || |  |||  |||||||||| ||         
T  34230511 -caaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaaga 34230414  T
Q  213 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 312  Q
    |||||||||| | |||  |||| | |||||||| |||||||||||||| | ||||||| ||||||| ||   |||||| |||||||||||||||||||||    
T  34230413 aaaaacacccataaaaaaaaaaat-tcagtcctaaacaccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctct 34230315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 16952230 - 16952350
Alignment:
Q  190 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 289  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  16952230 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 16952326  T
Q  290 accattcagcttccaccacctctc 313  Q
    | | || |||||||||||||||||    
T  16952327 atcgtttagcttccaccacctctc 16952350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 17022895 - 17023015
Alignment:
Q  190 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 289  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  17022895 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 17022991  T
Q  290 accattcagcttccaccacctctc 313  Q
    | | || |||||||||||||||||    
T  17022992 atcgtttagcttccaccacctctc 17023015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 17060201 - 17060321
Alignment:
Q  190 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 289  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  17060201 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 17060297  T
Q  290 accattcagcttccaccacctctc 313  Q
    | | || |||||||||||||||||    
T  17060298 atcgtttagcttccaccacctctc 17060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 41113412 - 41113488
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    |||||||||||||||||||||||||||| |||| | | |||||||||||||||| | ||||||||| ||||||||||    
T  41113412 agagaccggtgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaa 41113488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 41086475 - 41086554
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 95  Q
    |||||||| ||||||||||| ||||||| |||| || ||||||||||||| |||||| ||||||||| ||||||||||||    
T  41086475 cagagaccagtgaaactgagcatacaaagaaaaagcatcgtatataggcgaaacacccgaaaataaataccctaaaaaca 41086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 4472346 - 4472276
Alignment:
Q  23 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| ||||||    
T  4472346 cggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaaa 4472276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 22884802 - 22884852
Alignment:
Q  33 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 83  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22884802 gagaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 33788296 - 33788362
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 82  Q
    ||||||||||||| || |||||||||||| ||||||| |||||||| |||||||||| |||||||||    
T  33788296 cagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 29139624 - 29139700
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 95  Q
    ||||||||||||||||| ||||||| ||||||||||||||||  | |||||||  ||||||||| ||| ||||||||    
T  29139624 agaccggtgaaactgaggatacaaataaaaggcgtcgtatattagtggaacactcgaaaataaataccttaaaaaca 29139700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 29997355 - 29997265
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggac 106  Q
    ||||||||| ||||| ||| |||| |||||||||||  |||||||| |||||||| | ||||||||||| ||||||| ||||  |||||||    
T  29997355 cagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacatccgaaaataaacatcctaaaatcatccctgaggac 29997265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 33533415 - 33533500
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag------gcggaacacctgaaaataaacaccctaaaaaca 95  Q
    ||||||| ||||||||| || |||||||||||||||| | |||||||      ||||||||| |||||||||||||||||||||||    
T  33533415 cagagactggtgaaactaaggatacaaacaaaaggcgccatatataggcggaagcggaacacttgaaaataaacaccctaaaaaca 33533500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 27740378 - 27740331
Alignment:
Q  36 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 83  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  27740378 aatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 41086664 - 41086767
Alignment:
Q  213 aaaaacacccctcaaagtaaaactctcagtcctgaa-caccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 311  Q
    |||||||||||||||| | |||||| || ||||||| | ||||||| ||   |||||   ||||||| || |||||||| ||||||||||||||||||||    
T  41086664 aaaaacacccctcaaaatcaaactcgcaatcctgaaactccaaagtagagtcacatccaaaaagctcttatccgaaagatcattcagcttccaccacctc 41086763  T
Q  312 tcga 315  Q
    ||||    
T  41086764 tcga 41086767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 42802496 - 42802427
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata---ggcggaacacctgaaaataaa 82  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||   |||||||||||  ||||||||    
T  42802496 cagagatcagtgaaactgagaatacaaacaaaaggtgtcgtatatatacggcggaacacccaaaaataaa 42802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 25504559 - 25504629
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 86  Q
    |||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||  ||||||||||||    
T  25504559 cagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 315
Target Start/End: Original strand, 14106368 - 14106490
Alignment:
Q  190 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 289  Q
    |||||||||||||||||||    || ||||||||||||| |||||||||||| | | |||||| ||| ||| | ||||  | ||||||| || ||||| |    
T  14106368 atcgtcactactcaccccca---aagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacattcgtaaagctcttaaccgaatg 14106464  T
Q  290 accattcagcttccaccacctctcga 315  Q
    | ||| || ||||||| |||||||||    
T  14106465 atcatacaacttccacaacctctcga 14106490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 40360652 - 40360687
Alignment:
Q  38 tacaaacaaaaggcgtcgtatataggcggaacacct 73  Q
    |||||||||||| |||||||||||||||||||||||    
T  40360652 tacaaacaaaagacgtcgtatataggcggaacacct 40360687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 1269861 - 1269791
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 87  Q
    |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  | |||||||||||    
T  1269861 agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacaccc 1269791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 44594071 - 44594018
Alignment:
Q  33 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 86  Q
    |||||||||||||||||||||||| |||||  |||| | | |||||||||||||    
T  44594071 gagaatacaaacaaaaggcgtcgtgtatagatggaatatccgaaaataaacacc 44594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 38636905 - 38637203
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaa-aacatcattgaggacaacaccca 114  Q
    ||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||| || | |   ||||||||||||||    
T  38636905 cagagaccggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacaccca 38637003  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 214  Q
    | |||| |||   ||| || |||||| | |||||||||||||||  ||| ||||| |||||||||||||||| | |||||||||||||||||||||  ||    
T  38637004 cgaaaa-tacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaaccacccatcgtcactactcacccccttagaa 38637102  T
Q  215 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 314  Q
    |||||||||| | | |||||||| || || ||||||||||||||||||  | || ||||||||| || | |||||| |||||||||||||||||||||||    
T  38637103 aaacaccccttatactaaaactcccaatcttgaacaccaaagttgaaccgcctcggcaaagctcttatctgaaagatcattcagcttccaccacctctcg 38637202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 41117639 - 41117937
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaa-aacatcattgaggacaacaccca 114  Q
    ||||||| ||||||| ||||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||    
T  41117639 cagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacacccgaaaataaacaccctaaataacaccat-gaggacaacaccca 41117737  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 214  Q
    | |||| |||  |||| || ||| || |||||| | ||||||||  |||  |||| ||| |||||||||||| | ||||||| |||||||||| ||  ||    
T  41117738 ccaaaa-tacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatccaaccacccatcgtcattactcacccctttagaa 41117836  T
Q  215 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 314  Q
    |||||||||||| | |||||||| |  || |||||||||||  ||| | || || ||||||||||||  ||||||| |||||||||||||||||||||||    
T  41117837 aaacacccctcagaataaaactcccgatcatgaacaccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctcg 41117936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 107 - 311
Target Start/End: Complemental strand, 49528390 - 49528187
Alignment:
Q  107 aacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcaccc 206  Q
    ||||||||| ||||| || | |||||| |||||||||||||||||| || |  ||||||| |  ||| ||||| |||||||| ||| |||||||||||||    
T  49528390 aacacccaccaaaaa-acacgtcatcacctaaaatagactccttcatgacaccgaccactattaaaacgatattcaaccatccatcttcactactcaccc 49528292  T
Q  207 ccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacc 306  Q
    ||||  |||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||| |||||||| ||| |||||||| |||||| ||||||||    
T  49528291 ccttagaaaaacacccctcaaaataaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccacc 49528192  T
Q  307 acctc 311  Q
    |||||    
T  49528191 acctc 49528187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 23 - 312
Target Start/End: Original strand, 16832698 - 16832988
Alignment:
Q  23 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 122  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||  ||||||||||||||||||||     |||||||||||||||| ||| |     
T  16832698 cggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccctaaaaactctcctgaggacaacacccaccaaataa 16832797  T
Q  123 acgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaaca 219  Q
    |||  ||| || |||||| | | |||| |||| |||| |||| ||||| ||| ||||||||  |||| |  |||||||||||||||||     |||||||    
T  16832798 acg--tcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcaccccaaagaaaaaaca 16832895  T
Q  220 cccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 312  Q
    ||||||||| | |||||| ||||| |||||||||||||||| | ||||| | ||||||| || || ||||| ||||||||||| | |||||||    
T  16832896 cccctcaaaattaaactcacagtcttgaacaccaaagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 100 - 305
Target Start/End: Complemental strand, 25753499 - 25753293
Alignment:
Q  100 tgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcac 197  Q
    |||||||||||||||| |||| |||   |||||| |||||| | ||||||||||||||| | |||||||| ||  | ||||||||  |||  ||||||||    
T  25753499 tgaggacaacacccaccaaaa-tacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgtcac 25753401  T
Q  198 tactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattca 297  Q
    |||||||||||    |||||||||||||||| | ||||| ||||||||||||| ||||||||||| |||||   |||||| ||  |||||||| ||||||    
T  25753400 tactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaagatcattca 25753301  T
Q  298 gcttccac 305  Q
    ||||||||    
T  25753300 gcttccac 25753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 19814888 - 19815190
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacaccc 113  Q
    ||||||||| | |||| |||| ||||||| ||||||||| ||||||| || |||||||  |||||||||| | ||||| |||   |  ||||||||||||    
T  19814888 cagagaccgataaaacagagagtacaaactaaaaggcgttgtatataagcagaacacccaaaaataaacatcataaaagacactttcaaggacaacaccc 19814987  T
Q  114 ac-aaaaaatacg-catcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa--ccatctatcgtcactactcaccccct 209  Q
    || |||||| ||| || ||  | || ||| ||||  |||||||||||||||||| ||| |||||||||||||  |||||  | ||||||||||||||||     
T  19814988 accaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcaccccca 19815087  T
Q  210 tctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacc 309  Q
       || |||||  |||||  | |||||||||||||| |||||||||||| | | ||||| | |||| ||||| |||||||| |||| ||||||||||| |    
T  19815088 ---aagaacacttctcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatc 19815184  T
Q  310 tctcga 315  Q
    ||||||    
T  19815185 tctcga 19815190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 22810844 - 22811128
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    ||||||| ||||||| |||||||||||||||| |||| |||||||| |||||| | | |||| |||||||||||           ||||||  |||||||    
T  22810844 cagagactggtgaaattgagaatacaaacaaa-ggcgccgtatataagcggaatatccgaaagtaaacacccta-----------gaggacctcacccac 22810931  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
     |||| ||| | ||| |  |||||| ||||| ||||||||||  |||||||||| ||| ||||||| |||||| |||||||||||||||||||    |||    
T  22810932 caaaa-tacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctaccatccatcgtcactactcacccccaaagaaa 22811030  T
Q  216 aacacccctcaaag-taaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 313  Q
    || ||| || |||| |||||| ||| |||||||||||||||| ||| | ||||| ||||| |||||| ||  |||||  |||| |||||||||||||||    
T  22811031 aa-acctctaaaagataaaaccctccgtcctgaacaccaaagctgagccacatccgcaaaactcctaaccagaagacatttcaacttccaccacctctc 22811128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 42719565 - 42719494
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 88  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||    
T  42719565 agagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaaaataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 28967285 - 28967208
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    |||||| ||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  28967285 cagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaaa 28967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 48098714 - 48098645
Alignment:
Q  18 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 87  Q
    |||| |||||||||||| |||||||||||||| ||  |||||||||||||||||| ||||||||||||||    
T  48098714 gagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 25754272 - 25754206
Alignment:
Q  29 aactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 95  Q
    ||||||||||||||| |||| ||| ||||||||| ||||||| ||||||||||||||| ||||||||    
T  25754272 aactgagaatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaaaca 25754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 19673377 - 19673219
Alignment:
Q  148 cttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcct 245  Q
    |||||||||||||||||||||| ||   |||||||||  ||||  ||||||||||||||||||    || ||||| ||||||| | ||||||||||||||    
T  19673377 cttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcaccccca---aagaacactcctcaaaattaaactctcagtcct 19673281  T
Q  246 gaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacca 307  Q
     |||||||||||| | | ||||| | |||| || || || ||| | |||| |||||||||||    
T  19673280 caacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccacca 19673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 2061513 - 2061580
Alignment:
Q  26 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    ||||||||||||||||||||| |||  | |||||||||||||||| |||| ||||||||| |||||||    
T  2061513 tgaaactgagaatacaaacaagaggtcttgtatataggcggaacatctgataataaacacactaaaaa 2061580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 48098618 - 48098444
Alignment:
Q  144 actccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaa-acacccctcaaagtaaaactctca 240  Q
    |||| ||||| |||| |||||||||| ||| ||||||||  || | |  ||||||||||||||||||    |||| |||||||| |||   |||||| ||    
T  48098618 actctttcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaatacacccctaaaaaataaactccca 48098519  T
Q  241 gtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 315  Q
    ||| | |||||||||||||| | ||||| | |||||||||| | |||||| | |||| |||||||||||||||||    
T  48098518 gtcttaaacaccaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctctcga 48098444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 46487690 - 46487621
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacac 85  Q
    |||||||||||||    |||||||||||| |||||| |||||||||||||||||| | ||||||||||||    
T  46487690 cagagaccggtgatttagagaatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 49747937 - 49747785
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacacccac 115  Q
    |||||| ||||||| | || ||||||||||||| | ||||||||| |||||||| |  |||||||||||| | ||||||| |  ||||||||||||||||    
T  49747937 agagactggtgaaatttagcatacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccac 49747838  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgta 169  Q
      ||||| |   ||| || |||||| |||||| |||||||||| ||||| ||||    
T  49747837 -caaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgta 49747785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 43077355 - 43077307
Alignment:
Q  38 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 86  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||    
T  43077355 tacaaacaaaatacgtcgtatataggcagaacacctgaaaataaacacc 43077307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 9262850 - 9262807
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag 62  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  9262850 agaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 52009234 - 52009179
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 72  Q
    ||||| ||||||||||||| || |||||| |||||| |||||||||||||||||||    
T  52009234 agagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacacc 52009179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 39420726 - 39420784
Alignment:
Q  35 gaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    ||||| ||| |||||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  39420726 gaatataaataaaaggtgtcgtatataggcggaacacccgaaaatgaacaccataaaaa 39420784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 35947987 - 35948044
Alignment:
Q  25 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 82  Q
    ||||| ||||||||||||||||||| || | |||||| |||||||||| |||||||||    
T  35947987 gtgaatctgagaatacaaacaaaagacgccatatataagcggaacacccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 20632170 - 20632233
Alignment:
Q  18 gagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacctgaaaata 80  Q
    |||||||||||  | |||||||||||| ||||||||| |||||||||||||| ||| |||||||    
T  20632170 gagaccggtgattcagagaatacaaactaaaaggcgttgtatataggcggaatacccgaaaata 20632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 16502091 - 16502053
Alignment:
Q  38 tacaaacaaaaggcgtcgtatataggcggaacacctgaa 76  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  16502091 tacaaacaaaaggcgctgtatataggcggaacacctgaa 16502053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 8297880 - 8297583
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||| |  |||||| |||| ||||    
T  8297880 cagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacacctgaaaatacacaccctaaaaacacccctgaggataacatccac 8297782  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcac----ccccttc 211  Q
     |||| ||| ||||| || |||||| | ||||||||| ||||| ||||| |||| ||| ||| |||||||| |||||||||||||||||    ||||       
T  8297781 caaaa-tacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttccaaccacctatcgtcactactcactcacccccaaa 8297683  T
Q  212 taaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 311  Q
     |||||||||||||||| | |||||| |  || |||||||||||   || | ||||| | |||||||||| ||||||||||||||| |||||||||||||    
T  8297682 gaaaaacacccctcaaaattaaactccccatcatgaacaccaaaaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 26405222 - 26405515
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |  ||||||||||| ||||  |    
T  26405222 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaacaccttaaaaacacccctgaggacaacaaccac-ca 26405320  T
Q  119 aaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaaaac 218  Q
    |||||| | ||| || |||||| ||||| ||||| | |||||| ||||||  |||  |||||||| || | |||||||||||||| || |    ||||||    
T  26405321 aaatacacgtcaccacctaaaacagacttcttcatggaaatga-cactgttaaaaccatatccaatcacccatcgtcactactca-cctcaaagaaaaac 26405418  T
Q  219 acccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 315  Q
    || | ||||| | ||||||   ||||||||||||||||| || | || || | ||||||| || ||||||||||| |||||||||||||||||||||    
T  26405419 actcatcaaaattaaactcctcgtcctgaacaccaaagtcgagccacctccgaaaagctcatatccgaaagaccaatcagcttccaccacctctcga 26405515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 26045634 - 26045924
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacaccca 114  Q
    ||||||||||||||  |||| |||||||||||||||| ||||||||| ||||||| |  ||||||||||||||||||| |  |  |||||||||||||||    
T  26045634 cagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacaccca 26045733  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttct 212  Q
    | |||| | | | ||| || |||||| ||||| ||||| |||||||||||| ||| ||| || |||||||  |  | ||||||||||||||||||         
T  26045734 ccaaaatt-cacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaag- 26045831  T
Q  213 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccac 305  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||||   || || | ||||||| || | |||||| || |||||||||||    
T  26045832 aaaaacacccctcaaaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatatctgaaagatcaatcagcttccac 26045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 7682960 - 7682770
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 118  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||| ||||| ||||| |    |||| |||||||||||  |    
T  7682960 agacgggtgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacccaaaaaatacttatgagaacaacacccac-ca 7682862  T
Q  119 aaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa--tgatatccaaccatctatcgtcactactcaccccc 208  Q
    |||||| ||||| || ||||||||||||| ||||| |||| |||||| ||| |||  | || ||  |||||| |||||||||||||| ||||    
T  7682861 aaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaactttatctcgcaccatccatcgtcactactcaacccc 7682770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 30097725 - 30097601
Alignment:
Q  34 agaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacccta-aaaacatcattgaggacaacacccacaaaaaatacgcatcatc 132  Q
    ||||||||||| |||| || ||||||||||||||||||| |||||||||||||||| ||||||||  ||| ||||||||||||  ||||||| | ||| |    
T  30097725 agaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccac-caaaatacacgtcacc 30097627  T
Q  133 atctaaaatagactccttcacgaaaa 158  Q
    | |||||| |||||||||||||||||    
T  30097626 acctaaaacagactccttcacgaaaa 30097601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 25992411 - 25992332
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 95  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||    
T  25992411 cagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacacccgacaataaacaccctaaaaaca 25992332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 10175089 - 10174921
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||  |||||||| ||||||||| |||||||||| |   |||||||||||||||    
T  10175089 cagagaccggtgaaattaagaatacaaacaaaaggcatcgtatataggcaaaacacctg-aaataaacatcctaaaaacacctccgaggacaacacccac 10174991  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaacca 186  Q
      ||| ||| | | | || |||||| ||||||||||   |||| |||||| ||| ||| ||||||||||||    
T  10174990 -caaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaacca 10174921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 14302124 - 14302356
Alignment:
Q  25 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatac 124  Q
    |||||| ||| |||| |||||| || || |||||||||  ||||||||  |||||||| | |||||||||| |  ||| ||||||||||||  |||||||    
T  14302124 gtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaaacacccctgatgacaacacccac-caaaatac 14302222  T
Q  125 gcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaacaccc 222  Q
     | ||| || |||||| ||| |||||| |||||| ||||| |||| ||| ||||||||  |||| || ||||||||||||| ||||    ||||| ||||    
T  14302223 acgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaataccc 14302322  T
Q  223 ctcaaagtaaaactctcagtcctgaacaccaaag 256  Q
    |||||| | |||||| || |||||||||||||||    
T  14302323 ctcaaaattaaactcccactcctgaacaccaaag 14302356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 13953928 - 13953996
Alignment:
Q  25 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13953928 gtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaa 13953996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 7195109 - 7195210
Alignment:
Q  213 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 312  Q
    ||||||| |||||||| |||||||| |||||||||| ||||||| ||| | ||||| |||||||||||| || |||||  ||||||||||||| ||||||    
T  7195109 aaaaacaaccctcaaaataaaactc-cagtcctgaataccaaagctgagccacatccgcaaagctcctatccaaaagattattcagcttccacgacctct 7195207  T
Q  313 cga 315  Q
    |||    
T  7195208 cga 7195210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 33109881 - 33110035
Alignment:
Q  24 ggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaata 123  Q
    |||||||||||||||||||||||||| ||  |||||  | || |||||| ||||||||||||  |||||||| | |  | |||||||||||| |||| ||    
T  33109881 ggtgaaactgagaatacaaacaaaagacgctgtata--gccgaaacacccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaa-ta 33109975  T
Q  124 cgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa 183  Q
    | | |||||| |||||| | || |||||||||||| |||||||||| ||| |||||||||    
T  33109976 cacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaa 33110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 7194982 - 7195113
Alignment:
Q  26 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacg 125  Q
    |||||||||||||| | |||||| | ||||| |||| |||||||| |  ||||||||||||||||||||| |  || |||||||||||||  |||||||     
T  7194982 tgaaactgagaatatagacaaaatgagtcgtttatatgcggaacatccaaaaataaacaccctaaaaacaccgctgcggacaacacccac-caaaataca 7195080  T
Q  126 catcatcatctaaaatagactccttcacgaaaa 158  Q
    | ||| || |||||| |||||||||||| ||||    
T  7195081 cgtcaccacctaaaacagactccttcacaaaaa 7195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 33258560 - 33258641
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatc 97  Q
    ||||||||||||||| ||  |||||||| |||||||| |||||||| | | |||||| ||||||||||||| ||||||||||    
T  33258560 cagagaccggtgaaattggaaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaaacatc 33258641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 5187355 - 5187276
Alignment:
Q  13 gagcagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    ||||||||| |||||||| ||||||||||||||||||||| || ||||||  | | |||| ||||||||||||| |||||    
T  5187355 gagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacaccataaaa 5187276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 27713481 - 27713421
Alignment:
Q  18 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 78  Q
    |||||| ||||||||||| |||||||| ||||||| | ||||||||||||||||| |||||    
T  27713481 gagaccagtgaaactgaggatacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 31742552 - 31742504
Alignment:
Q  38 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 86  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  31742552 tacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 8731348 - 8731278
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 86  Q
    |||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||  ||||||||||||    
T  8731348 cagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 23426716 - 23426646
Alignment:
Q  10 gaggagcagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaata 80  Q
    ||||| |||||||||||||  | ||||||||||  |||||| | ||||||||||||||||||| |||||||    
T  23426716 gaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacacccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 37108170 - 37108105
Alignment:
Q  55 gtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 120  Q
    |||||||||||||||| |  ||||||||||||||||||||| |  |||||| ||||||||| ||||    
T  37108170 gtatataggcggaacatcaaaaaataaacaccctaaaaacacccatgaggataacacccaccaaaa 37108105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 24071952 - 24072000
Alignment:
Q  36 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 84  Q
    ||||||||| || |||| ||||||||||||||||||| |||||||||||    
T  24071952 aatacaaactaagggcgccgtatataggcggaacacccgaaaataaaca 24072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 7391668 - 7391766
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaaca--aaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacc 112  Q
    ||||||||||||||| ||||||||||||    ||| | |  |||||||||||||| |||||||| || ||| |||||||||| |  |||||||||||||    
T  7391668 cagagaccggtgaaaatgagaatacaaagtgtaaatgtgctgtatataggcggaaaacctgaaagtacacaacctaaaaacacccatgaggacaacacc 7391766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 4914177 - 4914247
Alignment:
Q  23 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    |||||||||||||||||| ||  ||||| |||||||||| |||||||| | || ||||||| | |||||||    
T  4914177 cggtgaaactgagaatactaattaaaggtgtcgtatatatgcggaacatccgataataaaccctctaaaaa 4914247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 34345831 - 34345860
Alignment:
Q  44 caaaaggcgtcgtatataggcggaacacct 73  Q
    ||||||||||||||||||||||||||||||    
T  34345831 caaaaggcgtcgtatataggcggaacacct 34345860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 24324470 - 24324767
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 116  Q
    ||||| || ||||| |||||||||||||||||  |||| |||||||  | |||||| |||||||||||| ||||||||| | ||||||||||||| |||     
T  24324470 agagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacacccgaaaataaacactctaaaaacacccttgaggacaacactcacc 24324569  T
Q  117 aaaaatacgcatcatcatctaaaatagactccttcacgaaaat-gaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
    |||| ||| | ||| ||  ||||| |||||||||||||||||  ||||| ||||  || |||||||||||| | ||||||||||||||||||     |||    
T  24324570 aaaa-tacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaaccacc-atcgtcactactcacccctaaagaaa 24324667  T
Q  216 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 315  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||| | ||| | | |||||||||| |||||||| |||||||||||||||||| |||||    
T  24324668 aacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccacccctcga 24324767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 42532930 - 42533035
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||  | |||| ||||||||||||    
T  42532930 cagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaactcccttgatgacaacacccac 42533029  T
Q  116 aaaaaa 121  Q
    ||||||    
T  42533030 aaaaaa 42533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 16828774 - 16828894
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 118  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||| ||| | |  ||| || |||| ||||  |    
T  16828774 agaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcctagaaatacccctgaagaaaacaaccac-ca 16828872  T
Q  119 aaatacgcatcatcatctaaaa 140  Q
    |||||| |||||||||||||||    
T  16828873 aaatacacatcatcatctaaaa 16828894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 33719375 - 33719183
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca-tcattgaggacaacaccca 114  Q
    |||||| ||||||||||||||||||||||||| ||||  | |||||||||||||| | |||| ||||||||||||||||| ||| |||||||||||||||    
T  33719375 cagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaacatc-gaaagtaaacaccctaaaaacactca-tgaggacaacaccca 33719278  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcac-gaaaatgaccactgtataaatgatatccaac-catct-atcgtcactactcacccc 207  Q
    |  |||||||  |||| |  ||||||  |||||||||||  |||| |||| ||||| |||||||||||||| |  || ||||||||||||||||||    
T  33719277 c-caaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacactactcatcgtcactactcacccc 33719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 8745388 - 8745264
Alignment:
Q  191 tcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaaga 290  Q
    ||||||||||||||||||    |||||||||||||||| | |||||| ||||| |||||||||||| ||| | ||||| | |||||||||| | ||||||    
T  8745388 tcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatccgaaaagctcctatctgaaaga 8745289  T
Q  291 ccattcagcttccaccacctctcga 315  Q
     ||| |||||||||| |||||||||    
T  8745288 tcatgcagcttccacaacctctcga 8745264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 16954895 - 16954795
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 118  Q
    |||||||||||||||||| |||||| |||||||  ||||||||||||||||| | |||||||||||| ||||||||| |  ||| || |||| |||||||    
T  16954895 agaccggtgaaactgaga-tacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgctaaaaacacccctgaagaaaacaaccacaaa 16954797  T
Q  119 aa 120  Q
    ||    
T  16954796 aa 16954795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 39013643 - 39013558
Alignment:
Q  25 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaaca 110  Q
    |||||||||||||||||||||| || ||| |||||||| ||||| |||| |||||||||||||| |||||| |  |||||||||||    
T  39013643 gtgaaactgagaatacaaacaagagacgttgtatatagacggaatacctaaaaataaacaccctgaaaacaactatgaggacaaca 39013558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 6726090 - 6726146
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 72  Q
    |||||| ||||||||||||||||||||||||||  || |||||||||||||||||||    
T  6726090 cagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacacc 6726146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 48058343 - 48058399
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 72  Q
    |||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  48058343 cagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcggaacacc 48058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 1321192 - 1321011
Alignment:
Q  26 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacg 125  Q
    ||||||||||||||||||||  | ||  |||||||||||||||| || |||||||||||||||||||||  | |||| |||| || ||||  |||||||     
T  1321192 tgaaactgagaatacaaacacgacgc--cgtatataggcggaactcccgaaaataaacaccctaaaaac-cccttgaagacaccatccac-caaaataca 1321097  T
Q  126 catcatcatctaaaatagactcc-ttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc 208  Q
    ||||| || |||||| |||| || |||||||||   ||||||||| ||| |||||| |  ||||   |||||||||||||||||||    
T  1321096 catcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcaccccc 1321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 6716417 - 6716484
Alignment:
Q  26 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    |||||| |||||||||||  ||||| | ||||||||  ||||||||||||||||||||||||||||||    
T  6716417 tgaaacagagaatacaaattaaaggggccgtatataaccggaacacctgaaaataaacaccctaaaaa 6716484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 36674880 - 36674809
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 87  Q
    |||||| |||||||| ||   |||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  36674880 cagagatcggtgaaattggagatacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 44755968 - 44755906
Alignment:
Q  25 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 88  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  44755968 gtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaacacct-aaaataaacaccct 44755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 3478729 - 3478683
Alignment:
Q  46 aaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  3478729 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 3478683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 28534175 - 28534240
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataa 81  Q
    |||||||||||||    ||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  28534175 cagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacacccgaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 8745539 - 8745469
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 87  Q
    ||||||| ||||||||||| |||| |||||| || || ||||||||||||||||||| ||||| ||||||||    
T  8745539 cagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacacccgaaaa-aaacaccc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 22567781 - 22567818
Alignment:
Q  34 agaatacaaacaaaaggcgtcgtatataggcggaacac 71  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22567781 agaatacaaacaaaaggcgccgtatataggcggaacac 22567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 34390206 - 34390075
Alignment:
Q  181 caaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcct 280  Q
    |||||| | |||||||||||||| ||||    || ||||||||||||| |||||||| ||| |   |||||| ||||||| | |||| || |||||||||    
T  34390206 caaccacccatcgtcactactcatcccca---aagaacacccctcaaaataaaactcccagactacaacacccaagttgagccacatttgaaaagctcct 34390110  T
Q  281 acccgaaagaccattcagcttccaccacctctcga 315  Q
    |  |||| || ||| |||||||||| |||||||||    
T  34390109 aatcgaatgaacatgcagcttccacaacctctcga 34390075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 47456744 - 47456800
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 72  Q
    |||||||||||||||| || ||||||||  |||||||  ||||||||||||||||||    
T  47456744 cagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacacc 47456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 6716535 - 6716707
Alignment:
Q  144 actccttcacgaaaatgaccactgtataaatgatatc-ca-accatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcag 241  Q
    ||||||||||||||| |||||||||| ||| | |||| || |||| | || ||||||||||||||||  |   ||||||||| |||| | |||||| ||     
T  6716535 actccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaac--gaaacaccccacaaaattaaactcccat 6716632  T
Q  242 tcctgaacaccaaagttgaactacatctgcaaagctcctacccg-aaagaccattcagcttccaccacctctcga 315  Q
    |||| |||||||||| ||| | ||||| | |||  || || ||| ||||| || |||||||||||||||||||||    
T  6716633 tcctcaacaccaaagctgagccacatccggaaaaatcttatccgaaaagatcaatcagcttccaccacctctcga 6716707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 13312227 - 13312180
Alignment:
Q  36 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 83  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||||||    
T  13312227 aatacaaactaaaggctttgtatataggcggaacacccgaaaataaac 13312180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 37117 - 36820
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 114  Q
    ||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| | ||||||||||||| | ||||||| |  ||||||| |||||||    
T  37117 cagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacaccca 37018  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 214  Q
     | ||||||| | ||| || |||||| ||||||||||||| |||  ||||||||| ||| || ||||||||||| | |||||||||||||||||    ||    
T  37017 -acaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatccaaccatccaccgtcactactcacccccaaagaa 36920  T
Q  215 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 314  Q
    |||||||||| |||  | ||| | | |||||||||||||||| ||| | |||   | |||||||||| ||||||||||||||| |||||||||| |||||    
T  36919 aaacacccct-aaaaaataaccccccgtcctgaacaccaaagctgagccacaatcgaaaagctcctaaccgaaagaccattcaacttccaccacatctcg 36821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 17656408 - 17656575
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 116  Q
    |||||||||||||| |||  ||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | |||||||||||||||||     
T  17656408 agagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaaacacccttgaggacaacacccac- 17656506  T
Q  117 aaaaatacgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatccaac 184  Q
     ||||| | | ||| ||||||||| ||||||||||| | |||| |||||||| | ||| ||||||||||    
T  17656507 caaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaac 17656575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 26 - 260
Target Start/End: Original strand, 10248246 - 10248482
Alignment:
Q  26 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccct-aaaaacatcattgaggacaacacccacaaaaaata 123  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||| |||| ||||||| | ||||||| | ||||||||||||||| |  ||||||    
T  10248246 tgaaactgagaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgc-caaaata 10248344  T
Q  124 cgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttcta-aaaacac 220  Q
    | | ||| || |||||| | ||||||||||||||| |||||||||| ||| || |||| ||  || | |||||||||||||||||||  | |  ||||||    
T  10248345 cacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccc--caacgaaacac 10248442  T
Q  221 ccctcaaagtaaaactctcagtcctgaacaccaaagttga 260  Q
    || ||||| | ||||||| |||||| ||||||||||||||    
T  10248443 ccgtcaaaattaaactctaagtcctcaacaccaaagttga 10248482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 12197747 - 12197822
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  12197747 agagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaa 12197822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 12442175 - 12442250
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  12442175 agagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaa 12442250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 17656872 - 17656972
Alignment:
Q  215 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 314  Q
    |||||||||||||| | |||||| || || |||||||||||||||| | || |||| ||||||||||   |||||| ||||||||||||||||||| |||    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcg 17656971  T
Q  315 a 315  Q
    |    
T  17656972 a 17656972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 2273760 - 2273799
Alignment:
Q  54 cgtatataggcggaacacctgaaaataaacaccctaaaaa 93  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  2273760 cgtataaaagcggaacacctgaaaataaacaccctaaaaa 2273799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 8862308 - 8862370
Alignment:
Q  32 tgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccctaaaaa 93  Q
    ||||| ||||||||||||||| ||||||||| ||||||| ||  |||||||||||| ||||||    
T  8862308 tgagagtacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaa 8862370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 9831691 - 9831741
Alignment:
Q  33 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 83  Q
    |||||||||||| |||| |||||||||||||| || |||| ||||||||||    
T  9831691 gagaatacaaactaaagacgtcgtatataggccgaccacccgaaaataaac 9831741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 34775267 - 34775129
Alignment:
Q  31 ctgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacacccacaaaaaatacgcatc 129  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| | ||||| | || ||||||||||||||||  ||||||| | ||    
T  34775267 ctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccac-caaaatacacgtc 34775169  T
Q  130 atcatctaaaatagactccttcacgaaaatgaccactgta 169  Q
    |||| |||||| ||||||||||||||||| ||| ||||||    
T  34775168 atcacctaaaacagactccttcacgaaaacgacaactgta 34775129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 27102589 - 27102489
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 118  Q
    |||| |||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||    
T  27102589 agactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggacaacacccaccaa 27102491  T
Q  119 aa 120  Q
    ||    
T  27102490 aa 27102489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 31290692 - 31290989
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    ||||||| ||||| ||||||||||||||||| ||||    ||| ||| ||||||||| ||||||||||||| |||||||| |  |||||||||  |||      
T  31290692 cagagactggtgagactgagaatacaaacaagaggcactatatgtagacggaacacccgaaaataaacaccataaaaacacccctgaggacaattccctt 31290791  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
     | |  ||| ||||| || |||||  |||||||||| |||||| |||||||||| |||||||| ||||||||| ||||||||||||||||| |    |||    
T  31290792 cata--tacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaaccatccatcgtcactactcaccctcaaagaaa 31290889  T
Q  216 aacacccct-caaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 314  Q
    |||||||||  ||| ||||   |||| ||  ||||||||||| ||| | ||||| | |||||||||| |||||||| ||  || ||||||||||||||||    
T  31290890 aacacccctaaaaaataaacggctca-tctagaacaccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcg 31290988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 9313011 - 9313090
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 95  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9313011 cagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacacccgaaaataaacaccctaaaaaca 9313090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 32882757 - 32882583
Alignment:
Q  36 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacacccacaaaaaatacgcatcatcat 134  Q
    ||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| ||| |   |||||||||||||||  ||||||  ||||| |      
T  32882757 aatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccac-caaaatatacatcaccgc 32882659  T
Q  135 ctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc 208  Q
    ||||||  |||||||||||||||| || ||||||| | | ||||||||  |||| | |||||||||||||||||||    
T  32882658 ctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccc 32882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 46768579 - 46768437
Alignment:
Q  24 ggtgaaactgagaatacaaacaaaaggcgtc-gtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacacccacaaaaaa 121  Q
    ||||||| |||| |||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||| || |   ||||||||||||||| ||||     
T  46768579 ggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaat 46768480  T
Q  122 tacgcatcatcatctaaaatagactccttcacgaaaatgaccac 165  Q
    | | | ||| || |||||| ||||||||||||||||| ||||||    
T  46768479 t-cacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 11439698 - 11439919
Alignment:
Q  23 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 122  Q
    |||||||| ||||||||||||||||||||| | ||||||| ||||||| | ||||||||||||||||||| |  |  ||| ||||||| ||||  |||||    
T  11439698 cggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaacatccgaaaataaacaccctaaaatc-cccctgaagacaacatccac-caaaat 11439795  T
Q  123 acgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactact-cacccccttctaaaaaca 219  Q
    || | ||| || |||||| |||  |||||||||||   ||||| ||| ||||||||||||  ||||  ||||||||||||| |||||||    |||||||    
T  11439796 acacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaagaaaaaca 11439895  T
Q  220 cccctcaaagtaaaactctcagtc 243  Q
    ||||||| | | |||||| |||||    
T  11439896 cccctcagaattaaactcccagtc 11439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 4431084 - 4431006
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggc-ggaacacctgaaaataaacaccctaaaaaca 95  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||| ||||| |||||||||||||||    
T  4431084 agagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgggaacacctaaaaat-aacaccctaaaaaca 4431006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 10785133 - 10785359
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacacccac 115  Q
    |||||| ||| ||||||||||||||||| |||  || |||| | || |||||||||  || ||||||||| |||||| || | ||||||||||||||||     
T  10785133 agagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacaccttaaaaaacacccttgaggacaacacccat 10785232  T
Q  116 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 215  Q
     |||| |||   | ||||  ||||| ||||||||||||||||| |||  ||| | ||| |||||||||||| | |||||||||||||| |||   | | |    
T  10785233 caaaa-tacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaaccacccatcgtcactactcatccc--gcaaga 10785329  T
Q  216 aacacccctcaaagtaaaactctcagtcct 245  Q
    |||||||||||||   ||||||||||||||    
T  10785330 aacacccctcaaaaataaactctcagtcct 10785359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 32863225 - 32863287
Alignment:
Q  24 ggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 86  Q
    ||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  32863225 ggtgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacacc 32863287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 376477 - 376549
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 88  Q
    ||||||| | |||||| |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||    
T  376477 cagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacacctgaaaataaacaccct 376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 41126348 - 41126443
Alignment:
Q  218 cacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 313  Q
    |||||||| || | |||||||||||||| | |||||||||||| | ||||||| |||||||||| || ||||| | ||||||||||| ||||||||    
T  41126348 cacccctctaaatgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctc 41126443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 16577560 - 16577374
Alignment:
Q  126 catcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaacacccc 223  Q
    |||||||| |||||| |||||| |||||||||| |||||||  | ||||||||||||  |||||  |||||| |||||||| ||     || ||||||||    
T  16577560 catcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaa---aagaacacccc 16577464  T
Q  224 tcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 313  Q
    || ||   ||||| ||||||   | |||||||||||| | ||||| | ||||||||||  | ||||| ||||||||||||||||||||||    
T  16577463 tctaaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctc 16577374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 37200552 - 37200485
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 83  Q
    ||||||||||||| || |||||||||||| |||| | |||||||||||||||||| | ||||||||||    
T  37200552 cagagaccggtgataccgagaatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 52278682 - 52278589
Alignment:
Q  25 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 120  Q
    ||||||| |||||||||| | || |||| | ||||||||||||||||||||||||||||||| |||| ||| ||  ||||||||||||||| ||||    
T  52278682 gtgaaacagagaatacaagctaa-ggcgccatatataggcggaacacctgaaaataaacaccttaaagacacca-cgaggacaacacccaccaaaa 52278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 17034001 - 17033939
Alignment:
Q  19 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataa 81  Q
    ||||||||||  | || |||||||||||||||||||||||||| |||||||||| ||||||||    
T  17034001 agaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaacacccgaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 9557317 - 9557241
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    |||||||||||||| ||||||||||||| ||||  | |||||||||  || |||||| ||||||||||||| |||||    
T  9557317 cagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaacacccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 38544404 - 38544463
Alignment:
Q  33 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  38544404 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 38544463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 16149155 - 16149093
Alignment:
Q  47 aaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaa 108  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||| ||| | ||||||||||    
T  16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaa 16149093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 46603751 - 46603705
Alignment:
Q  36 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 82  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||||    
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaa 46603705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 50588964 - 50589014
Alignment:
Q  37 atacaaacaaaaggcgtcgtatataggcggaacacctgaa-aataaacacc 86  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  50588964 atacaaacgaaaggcgccgtatataggcggaacacctgaagaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 49820565 - 49820488
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccctaaaaa 93  Q
    ||||| ||||||| | |||||||||||| |||| |||| ||| ||||||||||| || ||||||||||||| ||||||    
T  49820565 agagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacccggaaaataaacaccataaaaa 49820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 19599042 - 19598990
Alignment:
Q  35 gaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa-taaacacc 86  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| ||||||||    
T  19599042 gaatacaataaaaaggcgccgtatataggcggaacacctgaaaagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 41126122 - 41126190
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 84  Q
    ||||||||| |||  | |||||||||||| |||||| |||||||||||  ||||||| |||||||||||    
T  41126122 cagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaaca 41126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 7451932 - 7451967
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggc 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7451932 cagagaccggtgaaactgagaatacaaacaagaggc 7451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 27905840 - 27905766
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    ||||||||||||| | |||| ||||||| | |||||||||||||||| |||||| |  |||||||||||| |||||    
T  27905840 agagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca-caaaaaataaacaccataaaa 27905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 42374573 - 42374526
Alignment:
Q  37 atacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 84  Q
    ||||||||||| |||| | ||||||||||||||||| |||||||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaaca 42374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 20701468 - 20701773
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 115  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||| || |||||| |   ||||||||||||||     
T  20701468 cagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctggaaataaacacact-aaaacacccacgaggacaacacccat 20701566  T
Q  116 aaaa----aatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc- 208  Q
     |||    || || | ||| || ||| || |||| | |||||||||   ||||||||| ||| ||||||||  || | | |||||||||||||||||||     
T  20701567 caaaccctaaaacacttcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcaccccca 20701666  T
Q  209 ttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccac 308  Q
        |||||||||| | |||   ||||||  |||| |||||| ||||||||| | ||||  | |||||||||| |||||||| |||||||||||||| ||    
T  20701667 aaaaaaaaacaccctttaaaaacaaactcctagtcttgaacaacaaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactac 20701766  T
Q  309 ctctcga 315  Q
    |||||||    
T  20701767 ctctcga 20701773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 15120273 - 15120415
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 114  Q
    ||||||||||| ||||||||||||||||| |||| || ||||| ||||| ||||| |||| |||||||||||| |||||||||  ||||||||||| |||    
T  15120273 cagagaccggtaaaactgagaatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatcca 15120372  T
Q  115 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 158  Q
    |  ||||||| ||||| || |||||| |||||| ||||| ||||    
T  15120373 c-caaaatacacatcaccacctaaaacagactcattcacaaaaa 15120415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 3880283 - 3880362
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 95  Q
    ||||||||||||||||||| |||||||||||||||   |||||||| ||||||||||  |||||||||||||||||||||    
T  3880283 cagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacaccaaaaaataaacaccctaaaaaca 3880362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 155 - 315
Target Start/End: Original strand, 3880405 - 3880568
Alignment:
Q  155 aaaatgaccactgtataaatgatatccaac--catctatcgtcactactcaccccct-tctaaaaacacccctcaaagtaaaactctcagtcctgaacac 251  Q
    |||| ||||||| || ||| ||||||||||  ||||| |||||||||||||||||||    |||||||||||||||| | ||||||  |||| |||||||    
T  3880405 aaaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactccaagtcttgaacac 3880504  T
Q  252 caaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 315  Q
    ||||| ||| | |||||   ||||||| || ||||||||  ||||| ||||||||||| |||||    
T  3880505 caaagctgagccacatccaaaaagctcatatccgaaagattattcaacttccaccaccactcga 3880568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 6860436 - 6860338
Alignment:
Q  23 cggtgaaactgagaatacaaacaaaaggcgtcgtatata--ggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 120  Q
    |||||||||| |||||||||||||||| || ||||||||  |||||||||||  ||||||||||||||||||||| |  || ||||||| ||||||||||    
T  6860436 cggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacccaaaaataaacaccctaaaaacacctatgcggacaac-cccacaaaaa 6860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 17278133 - 17278201
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 84  Q
    |||||||||||||  | |||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  17278133 cagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaaca 17278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 26534424 - 26534464
Alignment:
Q  38 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26534424 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 26534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 13423772 - 13423718
Alignment:
Q  16 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca 70  Q
    ||||||||  ||||||||||||||||| | |||||||||||||||||||||||||    
T  13423772 cagagacctttgaaactgagaatacaatctaaaggcgtcgtatataggcggaaca 13423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 58537 - 58238
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 116  Q
    ||||||||||||||| || |||| |||||||||||| ||||||||||  |||||||  |||||||| |||||||||||| |  |||| ||| ||  ||      
T  58537 agagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaacacccatgagaacacca-tcagc 58439  T
Q  117 aaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaa 214  Q
     ||| ||| ||||| || | |||| ||||||||||||||||| ||||| |||| || |||||||||  || | |  |||||||||||||| |||    ||    
T  58438 caaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaa 58339  T
Q  215 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 314  Q
     ||||| ||||||| | ||||||||||||| ||||||||||| ||| | ||||  | ||||||| || ||||||||  |||||||||||| || ||||||    
T  58338 caacactcctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcg 58239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 683 - 742
Alignment:
Q  33 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 92  Q
    |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  683 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 1347 - 1494
Alignment:
Q  41 aaacaaaaggcgtcgtatataggcggaacacctg-aaaataaacaccct-aaaaacatcattgaggacaac---acccacaaaaaatacgcatcatcatc 135  Q
    |||||||||||| ||||||||||| ||||||| | |||||||||||| | ||||||| |  | ||||||||   |||||| |||||||| | ||| || |    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccac-aaaaatacacgtcaccacc 1445  T
Q  136 taaaatagactccttcacgaaaatgaccactgtataaatgatatccaac 184  Q
    |||||  ||||||| ||||| ||  ||||||||| ||| ||||||||||    
T  1446 taaaactgactcctacacgagaacaaccactgtaaaaacgatatccaac 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 41841 - 41911
Alignment:
Q  17 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 87  Q
    |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  | |||||||||||    
T  41841 agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacaccc 41911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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