View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_low_16 (Length: 214)
Name: NF18418_low_16
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 5198354 - 5198537
Alignment:
| Q |
15 |
caaaggtcttcctcataatccaaaatcagcaagtgagacatcaaccaagatattcaagtcaatacaagaagaaaggaaacttttgtgactagttcatatg |
114 |
Q |
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| T |
5198354 |
caaaggtcttcctcataatccaaaatcagcaagtgagacatcaaccaagatattcaagtcaatacaagaagaaaggaaacttttgtgactagttcatatg |
5198453 |
T |
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| Q |
115 |
aaaatagataaccctcgcatacttgttcctatttgcaaatatttcacgagaaaaataaaatacacatattgattgagttattat |
198 |
Q |
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| T |
5198454 |
aaaatagataaccctcgcatacttgttcctatttgtaaatatttcacgagaaaaataaaatacacatattgattgagttattat |
5198537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 5178272 - 5178110
Alignment:
| Q |
15 |
caaaggtcttcctcataatccaaaatcagcaagtgagacatcaaccaagatattcaagtcaatacaagaagaaaggaaacttttgtgactagttcatatg |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||| ||| |||||||||| |
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| T |
5178272 |
caaaggtctttctcataatccaaaatcagcaagtgagtcatcaaccaagatattcaagtcaagac---aagaaaggaaaccattg-gaccagttcatatg |
5178177 |
T |
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| Q |
115 |
aaaatagataaccctcgcatacttgttcctatttgcaaatatttcacgagaaaaataaaatacacat |
181 |
Q |
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| T |
5178176 |
aaaatagatagccctcacatacttgttccaatttgtaaatgtttcacgagaaaaataaaatacacat |
5178110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 5059067 - 5059160
Alignment:
| Q |
15 |
caaaggtcttcctcataatccaaaatcagcaagtgagacatcaaccaagatattcaagtcaatacaagaagaaaggaaacttttgtgactagtt |
108 |
Q |
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| T |
5059067 |
caaagctcttcctcataatccaaaatcagcaagtgagtcagcagccaagatattcaaatcaatacaagaagaaaggaaatttttgtgacaagtt |
5059160 |
T |
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