View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18418_low_17 (Length: 214)

Name: NF18418_low_17
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18418_low_17
NF18418_low_17
[»] chr1 (3 HSPs)
chr1 (1-196)||(3538019-3538213)
chr1 (137-198)||(3545869-3545927)
chr1 (25-105)||(3545787-3545875)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 3538019 - 3538213
Alignment:
Q  1 catttttgtcccaacacaattatgaataggagaccacttaacttcgatatattaaagaagaacggtgtcacttaagttttgatctaatcatttagacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3538019 catttttgtcccaacacaattatgaataggagaccacttaacttcgatatattaaagaagaacggtgtcacttaagttttgatctaatcatttagacata 3538118  T
Q  101 gtaacccctccttcnnnnnnngtaattgttgaaaggtagtaactcctactttcgtgtatgataataatcatcttgcgcatgtaaaatgtgtgcatt 196  Q
    ||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3538119 gtaacccctccttctttttttgttattgttgaaaggtagtaactcctactttcgtgtatgataataatcatcttgc-catgtaaaatgtgtgcatt 3538213  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 3545869 - 3545927
Alignment:
Q  137 tagtaactcctactttcgtgtatgataataatcatcttgcgcatgtaaaatgtgtgcattgc 198  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||    
T  3545869 tagtaactcctattttcgtgtatgataa---tcatcttgcgcatgtaaaatgtgtgcattgc 3545927  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 3545787 - 3545875
Alignment:
Q  25 aataggagaccacttaacttcgatatattaaagaagaacggtg--------tcacttaagttttgatctaatcatttagacatagtaac 105  Q
    ||||||||||||||||| |||| || |||||||||||||||||        |||| || || |||||||||||||||||||||||||||    
T  3545787 aataggagaccacttaatttcggtacattaaagaagaacggtggtattacatcacctaggtattgatctaatcatttagacatagtaac 3545875  T

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