View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_low_2 (Length: 506)
Name: NF18418_low_2
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 37181364 - 37180883
Alignment:
| Q |
8 |
gagaagcaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttagtt |
107 |
Q |
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| T |
37181364 |
gagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttagtt |
37181265 |
T |
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| Q |
108 |
caacttcctgtgtttcactttgacaaaagcatttggttgcctacattagttataaccccaaaatagtccaatgtgatggccaactctttatattctatat |
207 |
Q |
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| T |
37181264 |
caacttcctgtgtttcactttgacaaaagcatttggttgcctacattagttataaccccaaaatagtccaatgtgatggccaactctttatattctatat |
37181165 |
T |
|
| Q |
208 |
attttaaattgcaaaagagnnnnnnntgtcgttgcaaaataatgatctctatgagttggtaatctgatttgagttgtaactgttttcaaaactcacctta |
307 |
Q |
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| T |
37181164 |
attttaaattgcaaaagagaaaaaaatgtcgttgcaaaataataatctctatgagttggtaatctgatttgagttgtccctgttttcaaaactcacctta |
37181065 |
T |
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| Q |
308 |
aatttgcttttttatgctagtatttcacttatcaaccaactttgtttttgtacaatcaatcaactctgtttaatccaacgatgttcatgaattcaataaa |
407 |
Q |
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| T |
37181064 |
aatttgcttttttatgctagtatttcacttatcaaccaactttgtttttgtacaatcaatcaactctgtttaatccaacgatgttcatgaattcaataaa |
37180965 |
T |
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| Q |
408 |
gattaaatttttttaaacattagaccannnnnnnnnaagcgttgttcttaaatataacttaagttaggctgatatacaatttc |
490 |
Q |
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| T |
37180964 |
gattaaatttttttaaacattagacca-ttttttttaagcgttgttcttaaatataacttaagttaggctgatatacaatttc |
37180883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 37180382 - 37180512
Alignment:
| Q |
8 |
gagaagcaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga-gaactat-aagagcttttgcaattttaagttag |
105 |
Q |
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|||||||| |||| |||||| |||||||||||||| ||||| ||||||||||||| || ||| ||| |||| || |||||||||||||||||| |||||| |
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| T |
37180382 |
gagaagcatagggatagtgggtggtcttatatagattgagatagatttgaaggagggtagttcggaagaaccatcaagagcttttgcaatttttagttag |
37180481 |
T |
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| Q |
106 |
ttcaacttcctgtgtttcactttgacaaaag |
136 |
Q |
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| T |
37180482 |
ttcaacttattgggtttcactttgacaaaag |
37180512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 37189472 - 37189365
Alignment:
| Q |
8 |
gagaagcaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga-gaactat-aagagcttttgcaattttaagttag |
105 |
Q |
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|||||||| |||| |||||| || ||||||||||| ||||||||||||||||||| || ||| ||| |||| || |||||||||||||||||| |||||| |
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| T |
37189472 |
gagaagcatagggatagtgggtgatcttatatagattgagagagatttgaaggagggtagttcggatgaaccatcaagagcttttgcaatttttagttag |
37189373 |
T |
|
| Q |
106 |
ttcaactt |
113 |
Q |
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|||||||| |
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| T |
37189372 |
ttcaactt |
37189365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 38704439 - 38704569
Alignment:
| Q |
11 |
aagcaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttagttcaa |
110 |
Q |
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|||||||||| ||||||||||| ||||||||||| ||||||||||| | || | |||||||| |||| ||| |||||||| |||||||| ||||| |
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| T |
38704439 |
aagcaaagggatagtggatggttttatatagagtagaagagatttgaatcaaggtagcttggagaataataaaagcatttgcaatcttaagttacttcaa |
38704538 |
T |
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| Q |
111 |
cttcctgtgtttcactttgacaaaagcattt |
141 |
Q |
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| T |
38704539 |
cttcctgtgttttactttcacaaaaccattt |
38704569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 37188054 - 37188197
Alignment:
| Q |
8 |
gagaagcaaaggggtagtggatggtct--tatatagagtgagagagatttgaaggagagttgtttggagaacta-taagagcttttgcaatt-------- |
96 |
Q |
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|||||| ||||| |||||||||||||| |||||||||| || ||||||||||||| || ||||||||||| | || |||||||||||||| |
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| T |
37188054 |
gagaaggaaaggagtagtggatggtcttatatatagagtaagcaagatttgaaggagggtagtttggagaacaactacgagcttttgcaatttttatttc |
37188153 |
T |
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| Q |
97 |
ttaagttagttcaacttcctgtgtttcactttgacaaaagcatt |
140 |
Q |
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| T |
37188154 |
tttagtttgtttaacttcctctgtttcactttgacaaaatcatt |
37188197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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