View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_low_4 (Length: 422)
Name: NF18418_low_4
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 45128920 - 45128538
Alignment:
| Q |
18 |
atttgtggacaaatatgatgtcactcttgatgtttgcatttactctgtgctgtcacaatccaaggttatttctcctcaacctcaagtgagtgtcttctct |
117 |
Q |
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| T |
45128920 |
atttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtgctgtcacaatccaaggttatttctcctcaacctcaagtgagtgtcttctct |
45128821 |
T |
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| Q |
118 |
tgtaccctctctcttctcatgcttttccatcacttcactactggaatttgaagcactaacacgacaaacaacgacacacgtcgataccaacaataataat |
217 |
Q |
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| T |
45128820 |
tgtaccctctctcttctcatgcttttccatcacttcacttctggaatttgaagcgctaacacgacaat----gacacacgtcgataccaa---taataat |
45128728 |
T |
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| Q |
218 |
ttgacagaattgaatgtaatcacttgtgtctgtcgatgttagacatcgacatcaacacgtgttagctttcaagtttagctaattcacttagattgttttg |
317 |
Q |
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| T |
45128727 |
ttgacagaattgaatgtaatcacttgtgtctgttgatgttagacatcgacatcaacacgtgttagctttcaagtttagctaattcacttagattgttttg |
45128628 |
T |
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| Q |
318 |
ttgtgtccttgtagcaagcaaatgaaatgatagatgtatgtgtggatgacaaggttacaaactacttaaacaggagagatgtgcaagagg |
407 |
Q |
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| T |
45128627 |
ttgtgtccttgtagcaagcaaatgaaatgatagatgtatgtgtggatgacaaggttacaaactacttaaacaggagagatgtgcaagagg |
45128538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 40280774 - 40280697
Alignment:
| Q |
19 |
tttgtggacaaatatgatgtcactcttgatgtttgcatttactctgtgctgtcacaatccaaggttatttctcctcaa |
96 |
Q |
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| T |
40280774 |
tttgtggacaaatatgatgttacccttgatgtatgcatttcctcagtgctttcacaatccaaagttatttgtcctcaa |
40280697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 40280565 - 40280505
Alignment:
| Q |
330 |
agcaagcaaatgaaatgatagatgtatgtgtggatgacaaggttacaaactacttaaacag |
390 |
Q |
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| T |
40280565 |
agcatgcaaatgagagtatagatgtatgtgtagatgacgaagttacaaattacttaaacag |
40280505 |
T |
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