View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_low_8 (Length: 311)
Name: NF18418_low_8
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_low_8 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 13642417 - 13642129
Alignment:
| Q |
11 |
caaaggtaagttaacatgactaaatatcacatgaaaatcaaccattgaaaatttagggttctgttattctatattgtaaattttcaattctattaaacat |
110 |
Q |
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| T |
13642417 |
caaaggtaaattaacatgactaaatatcacatgaaaatcaaccattgaaaatttagggttctgttattttatattgtaaattttcaattctattaaacat |
13642318 |
T |
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| Q |
111 |
cact-aaccatttagcaacaaataatttcaattcaagtgtgaattttatttgacaatggttcttattgacctatgaattgactctgtgccagatgaattg |
209 |
Q |
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| T |
13642317 |
cacttaaccatttagcaacaaataatttcaattgaagtgtgaattttatttgacaatggttgttattgacctatgaattgactctgtgccagatgaattg |
13642218 |
T |
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| Q |
210 |
gaaaatttctgaagaacaaaaataatgttacaagagattagaacaaaa--agattgtcaacattaagaaactttcttaattttccaagt |
296 |
Q |
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| T |
13642217 |
gaaaatttctgaagaaaagaaataatgttacaagagattagaacaaaaagagattgtcaacattaagaaactttcttaattttccaagt |
13642129 |
T |
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Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 55774 - 55846
Alignment:
| Q |
25 |
catgactaaatatcacatgaaaatcaaccattgaaaatttaggg-ttctgttattctatattgtaaattttca |
96 |
Q |
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| T |
55774 |
catgaccaaattccacatgaaaatcaacgattgaaaatttgggggttctgttattttatattgtaaattttca |
55846 |
T |
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