View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18418_low_9 (Length: 287)
Name: NF18418_low_9
Description: NF18418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18418_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 10153280 - 10153372
Alignment:
| Q |
17 |
attattgagaatgattaacaattaatcattctcaataatttgtatcaattgtttcttacacattttgttttttcatatacattgaaaaaagag |
109 |
Q |
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| T |
10153280 |
attattgagaatgattaacaattaatcattctcaataatttgtatcaattgtttcttacacattttgttttttcatatacattgaaaaaagag |
10153372 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 10153457 - 10153536
Alignment:
| Q |
194 |
cattattacaattttgatcttgcaatacaactttttgatgttcttgtgtttgattaataataacattgtttgtgatcttg |
273 |
Q |
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| T |
10153457 |
cattattacaattttgatcttgcaatacaactttttgatgttcttgtgtttgattaataataacattgtttgtgatcttg |
10153536 |
T |
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