View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18419_high_3 (Length: 442)
Name: NF18419_high_3
Description: NF18419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18419_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Complemental strand, 10930478 - 10930064
Alignment:
| Q |
12 |
atgaaggacggcagattcagcagggaagctgtagatgctgtaggatggagaggaaagctttatatggtaaacgtaaaaggcgatgctgctaaagaaggag |
111 |
Q |
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| T |
10930478 |
atgaaggacggcagattcagcagggaagctgtagatgctgttggatggagaggaaagctttatatggtaaacgtaaaaggcgatgctgctaaagaaggag |
10930379 |
T |
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| Q |
112 |
ttgtgtatgatgttgaagaggatacatggaaggagatgccagaggggatgttgttagggtttcgaggaccggtggcggcgatggaggaggaagtgatgta |
211 |
Q |
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| T |
10930378 |
ttgtgtatgatgttgaagaggatacatggaaggagatgccagaggggatgttgttagggtttcgaggaccggtggcggcgatggaggaggaagtgatgta |
10930279 |
T |
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| Q |
212 |
tgtggtggatgaagctaaaggtattcttagtagatacaactcagaagatgatatttgggaaaagatttttgagtctcaaagactcaaaggagctgaacaa |
311 |
Q |
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| T |
10930278 |
tgtggtggatgaagctaaaggtattcttagtagatacaattcagaagatgatatttgggaaaagatttttgagtctcaaagactcaaaggagctgaacaa |
10930179 |
T |
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| Q |
312 |
atggttgcaaaacaaggtagaatttgtgttgtatccaccgccgggatatctgtggtggatgtagtggcggcgccgcctagaatttcggtggttgagttgc |
411 |
Q |
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| T |
10930178 |
atggttgcaaaacaaggtagaatttgtgttgtttccaccgccgggatatctgtggtggatgtagtggcggtgccgcctagaatttcggtggttgagttgc |
10930079 |
T |
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| Q |
412 |
cggaagggtttgaag |
426 |
Q |
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| T |
10930078 |
cggaagggtttgaag |
10930064 |
T |
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