View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18419_low_1 (Length: 699)
Name: NF18419_low_1
Description: NF18419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18419_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 19 - 686
Target Start/End: Complemental strand, 31999134 - 31998467
Alignment:
| Q |
19 |
aggcgctatccttgttacatgtaggatcctaattggtttatgtaacaactcttgtgtggagttttctaggcagtcaatgcaatttctcatctttattgtg |
118 |
Q |
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| T |
31999134 |
aggcgctattcttgttgcatgtaggagcctaattggtttatgtaacaactcttgtgtggagttttctaggcagtcaatgcaatttctcatctttattgtg |
31999035 |
T |
|
| Q |
119 |
atgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaaatcgtctaaaattctaatgatg |
218 |
Q |
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| T |
31999034 |
atgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaaatcgtctaaaattctaatgatg |
31998935 |
T |
|
| Q |
219 |
attgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatatgtgccggttagacaaaaacaaaccagatagat |
318 |
Q |
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| T |
31998934 |
atcgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatatgtgccggttagacaaaaacaaaccagatagat |
31998835 |
T |
|
| Q |
319 |
attaatttatcaaaatcttttatttatttctttttgttttaatcaagctgtgacaacacaaattatatcaacatttagttgtgtaatcaaagagaccaga |
418 |
Q |
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| T |
31998834 |
attaatttctcaaaatcttttattaatttctttttgttttaatcaagctgtgacaacacaaattatatcaacatttagttgtgtaatcaaagagaccaga |
31998735 |
T |
|
| Q |
419 |
gaatacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactga |
518 |
Q |
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| T |
31998734 |
gaatacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatcacttaacataaattaaactaacattagacatactga |
31998635 |
T |
|
| Q |
519 |
acaacaattcatgacagtcagacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagaca |
618 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31998634 |
acaacaattcatgacagtcaaacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagaca |
31998535 |
T |
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| Q |
619 |
tccaccggagacaccaacgcagtcccataatgtccggcaaagctggagcctttgtcacatctccctct |
686 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31998534 |
tccaccggagacaccaacgcagtcccataatgtccggcaaaactggagcctttgtcacatctccctct |
31998467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 429 - 538
Target Start/End: Complemental strand, 42613200 - 42613096
Alignment:
| Q |
429 |
taccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactgaacaacaattc |
528 |
Q |
| |
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||||||| ||||||||||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||||| |
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| T |
42613200 |
taccacagtttctagcaattcctaccaacc-atgagcagctctactgttacatctctta----aacataaactaacattagacatactgaatatcaattc |
42613106 |
T |
|
| Q |
529 |
atgacagtca |
538 |
Q |
| |
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| | |||||| |
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| T |
42613105 |
aagtcagtca |
42613096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 17231882 - 17231961
Alignment:
| Q |
102 |
ttctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaa |
181 |
Q |
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|||||||||||||| |||| || |||||| |||| || | |||||| | ||| ||| ||||||||||||||||||||||| |
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| T |
17231882 |
ttctcatctttattatgatattccaacatatattaataacttgatcatcaatgataggaattagttttcctcttgtaaaa |
17231961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 44773688 - 44773620
Alignment:
| Q |
102 |
ttctcatctttattgtgatgtttcaacatgtattgatcatttgatctttaattatatgaattagttttc |
170 |
Q |
| |
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||||||| |||||| ||||||| | |||||||||| | |||||| |||||| | |||||||||||||| |
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| T |
44773688 |
ttctcatatttattatgatgttctatcatgtattgaccgtttgatttttaatgaaatgaattagttttc |
44773620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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