View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18419_low_4 (Length: 352)
Name: NF18419_low_4
Description: NF18419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18419_low_4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 113 - 352
Target Start/End: Complemental strand, 26596979 - 26596751
Alignment:
| Q |
113 |
gctcaagtctattgctctacaaaggtattgtatgttttggtttgatgtactgaaacacaaattgtgattcttacttgaagggaaattgaaggttatctag |
212 |
Q |
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| T |
26596979 |
gctcaagtctattactctacaaaggtattgtatgttttggtttgatgtactgaaacacaaattgtgattcttacttgaagg-----------ttatctag |
26596891 |
T |
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| Q |
213 |
aggagcaagagaaactttgtatttgaaagtagagaatagagtaggtgttgatgcaaagaacacttgtataatttggagcatggaaagaaagagagtgaat |
312 |
Q |
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| T |
26596890 |
aggagcaagaaaaactttgtatttgaaagtagagaatagagaaggtgttgatgcaaagaacacttgtataatttggagcatggaaagaaagagagtgaat |
26596791 |
T |
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| Q |
313 |
tttgaaattggatgcgagcatagaaaaagaatggtaatac |
352 |
Q |
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| T |
26596790 |
tttgaaattggatgcgagcatagaaaaagaatggtaatac |
26596751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 26597094 - 26597017
Alignment:
| Q |
16 |
cattgcgtttctcagtttagaggttaaaaccgaacgactccattcctcaaagtcaatgtgtgtatgatatatacgagt |
93 |
Q |
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| T |
26597094 |
cattgcctttctcagtttagaggttaaaaccgaacgactccattcctcaaagtcaatgtgtgtatgatatatacgagt |
26597017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 26604676 - 26604590
Alignment:
| Q |
173 |
attgtgattcttacttgaagggaaattgaaggttatctagaggagcaagagaaactttgtatttgaaagtagagaatagagtaggtg |
259 |
Q |
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| T |
26604676 |
attgtgattgtcactcgaagtgaaatggaagattatatagaggggcaagagaaactatgtatttgaatgtagagaatagagaaggtg |
26604590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 26612168 - 26612093
Alignment:
| Q |
179 |
attcttacttgaagggaaattg-aaggttatctagaggagcaagagaaactttgtatttgaaagtagagaatagag |
253 |
Q |
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| T |
26612168 |
attctcacttgaagtgaaaatggaaggttatctagaggggcaggagaaactatgtattttaaagtagagaatagag |
26612093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 26612395 - 26612342
Alignment:
| Q |
35 |
gaggttaaaaccgaacgactccattcctcaaagtcaa--tgtgtgtatgatata |
86 |
Q |
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| T |
26612395 |
gaggttaaaactgaacgactccattccccaaagtcaagttgtgtgtatgatata |
26612342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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