View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_high_16 (Length: 330)
Name: NF1841_high_16
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 18643084 - 18643377
Alignment:
| Q |
14 |
catcatcttgtgttcaggcctatgagtatattcaaaatcaatgtgcacaaaagctctttcaacttcaggaagttgctcaagtttctcttgaagtgtctca |
113 |
Q |
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| T |
18643084 |
catcatcttgtgttcaggcctatgagtatattcaaaatcaatgtgcacaaaagctctttcaacttcaggaagttgctcaagtttctcttgaagtgtctca |
18643183 |
T |
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| Q |
114 |
ccaatattgtgtgcttgatttaaaggcatatcttctggcaaaacaatgtccacttcaacaaaataatgagcaccaaatgtgtatgctctcacagtatcta |
213 |
Q |
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| T |
18643184 |
ccaatattgtgtgcttgatttaaaggcatatcttctggcaaaacaatgtccacttcaacaaaataatgagcaccaaatgtgtatgctctcacagtatcta |
18643283 |
T |
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| Q |
214 |
tgtgcttaacctcttcatgatgattccatattagatatgtcaactttccaagaaaatcaggcggtgcagtccttccgataagagatgatacatt |
307 |
Q |
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| T |
18643284 |
tgtgcttaacctcttcatggtgattccatattagatatgtcaactttcctagaaaatcaggtggcgctgtccttccgataagagatgatacatt |
18643377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 27307638 - 27307903
Alignment:
| Q |
27 |
tcaggcctatgagtatattcaaaatcaatgtgcacaaaagctctttcaacttcaggaagttgctcaagtttctcttgaagtgtctcaccaatattgtgtg |
126 |
Q |
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| T |
27307638 |
tcaggtctatgagtgaactcaaaatcaatgtgaacaaaagctctttcaacttctggaagttgttctagcttctcttgaagtgtttcaccaatgttgtgtg |
27307737 |
T |
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| Q |
127 |
cttgatttaaaggcatatcttctggcaaaacaatgtccacttcaacaaaataatgagcaccaaatgtgtatgctctcacagtatctatgtgcttaacctc |
226 |
Q |
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| T |
27307738 |
cttggttgagaaacatgtcttctggtaaaacaatgtcaacttccacaaagtaatctgcaccaaatgtgtatgctctaactgtatctatgtgcttgatttg |
27307837 |
T |
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| Q |
227 |
ttcatgatgattccatattagatatgtcaacttt-ccaagaaaatcaggcggtgcagtccttccgat |
292 |
Q |
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| T |
27307838 |
ttcatggtggttccatataaggtatgttaactttgccaag-aattcaggtggtgctgttcttccgat |
27307903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 36221527 - 36221724
Alignment:
| Q |
20 |
cttgtgttcaggcctatgagta-tattcaaaatcaatgtgcacaaaagctctttcaacttcaggaagttgctcaagtttctcttgaagtgtctcaccaat |
118 |
Q |
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|||||||||| || |||||||| |||||||| |||| || ||||| |||||||||| |||||| | || ||||| || |||||||||||||||||||| |
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| T |
36221527 |
cttgtgttcaagcttatgagtagtattcaaa-tcaacatgaacaaatgctctttcaatttcaggtaatttttcaagcttatcttgaagtgtctcaccaat |
36221625 |
T |
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| Q |
119 |
attgtgtgcttgatttaaaggcatatcttctggcaaaacaatgtccacttcaacaaaataatgagcaccaaatgtgtatgctctcacagtatctatgtg |
217 |
Q |
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| T |
36221626 |
gtcatgtgcttgaataagtgacatttcttccgatacaactatgtctacctcaacaaaataattggtcccaaatgtgtaggctctcaatgtatcaatgtg |
36221724 |
T |
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