View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_high_17 (Length: 329)

Name: NF1841_high_17
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_high_17
NF1841_high_17
[»] chr1 (1 HSPs)
chr1 (19-314)||(6229697-6229992)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 6229992 - 6229697
Alignment:
Q  19 aatgcttgataagcacttcagaatattttccgaaatcacatttggacagtcagcttctgttgacatttggcgtggactaggttgtcttaattctgcaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6229992 aatgcttgataagcacttcagaatattttccgaaatcacatttggacagtcagcttctgttgacatttggtgtggactaggttgtcttaattctgcaatt 6229893  T
Q  119 ttctgttcttttacccttggttgttgctgcacagtgggaaatatcacaattcacaatcattaactacaaggaatttcttttcacctactagtactaaaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6229892 ttctgttcttttacccttggttgttgctgcacagtgggaaatatcacaattcacaatcattaactacaaggaatttcttttcacctactagtactaaaac 6229793  T
Q  219 acagatgacaattaccttccttttcggagaatgcgactttttatgcaatgatgacttattgtcaacatgaagattttttattggacttctactcat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6229792 acagatgacaattaccttccttttcggagaatgcgactttttatgcaatgatgacttattgtcaacatgaagattttttattggacttctactcat 6229697  T

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