View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1841_high_22 (Length: 308)
Name: NF1841_high_22
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 42 - 288
Target Start/End: Original strand, 17379766 - 17380013
Alignment:
| Q |
42 |
ctaaacaaaattaattattccataaaaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagaca |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
17379766 |
ctaaacaaaattaattattccataaaaaattatcatcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtatagaga |
17379865 |
T |
|
| Q |
142 |
gattaatagtccggtcaagccaaatgctcaaaaccaaaccacataggaaaattaatatttcacacaggtt-aaaatgctgcagattgtcccaaacttcaa |
240 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
17379866 |
gattaatagtctgatcaagccaaatgctcaaaatcaaaccacataggaaaattaatatttcacacaggttaaaaatgctacagattggcccaaacttcaa |
17379965 |
T |
|
| Q |
241 |
actcttaactttataaagattagtttgacacatcaatgggtagtttat |
288 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17379966 |
actcttaactttataaagatttgtttgacacatcaatgggtagtttat |
17380013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 17395245 - 17395366
Alignment:
| Q |
67 |
aaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagacagattaatagtccggtcaagcc-aaa |
165 |
Q |
| |
|
|||||||| |||| |||||||||| |||| ||||||||||| |||||||||||| | ||||||||||||| |||| |||||||| ||||| || ||| |
|
|
| T |
17395245 |
aaaattattagcaaactaatataatcaaataacaatcaatagcgcaagttaacagtttcttctaaggtgg-gaca----aatagtccagtcaaaccaaaa |
17395339 |
T |
|
| Q |
166 |
tgctcaaaaccaaaccacataggaaaa |
192 |
Q |
| |
|
|| |||||| ||||||||||||||||| |
|
|
| T |
17395340 |
tgttcaaaatcaaaccacataggaaaa |
17395366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 17398837 - 17398900
Alignment:
| Q |
11 |
caaagggaaataaaagccttttctcatcatgctaaacaaaattaattattccataaaaaattat |
74 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
17398837 |
caaagagaaataagagctttttgccatcatgctaaacaaaagaaattattccacaaaaaattat |
17398900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University