View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_high_6 (Length: 536)
Name: NF1841_high_6
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 13 - 521
Target Start/End: Complemental strand, 38312013 - 38311488
Alignment:
| Q |
13 |
tgaatgacaaattggtggactccctgatccggctaatgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatggcgacaca |
112 |
Q |
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| T |
38312013 |
tgaatgacaaattggtggactccctgatccggctaatgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatggcgacaca |
38311914 |
T |
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| Q |
113 |
tcctgttgcatatgcaaaacaaacaatattaataaagataatgcccatcgttaactgaggatatgtgtgcgggtatgtgtgggtatgagtgtctttattg |
212 |
Q |
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| T |
38311913 |
tcctgttgcatatgcaaaacaaacaatattaataaagataatgcccattgttaactgaggatatgtgtgtgggtatgtgtgggtatgagtgtctttattg |
38311814 |
T |
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| Q |
213 |
ttagtaaagagtagtaaaaacctccctaacagagtgtgacataatgcg-----------------aaggtgcaaagtaagcgaaagaaaaccgactctta |
295 |
Q |
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| T |
38311813 |
ttagtaaagagtagtaaaaacctccctaacagagtgtgacataatgcgctcaagaacaagctgcgaaggtgcaaagtaagcgaaagaaaaccgactctta |
38311714 |
T |
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| Q |
296 |
gactcaattgagatttgagagctcctcggagacaaagtggttgctggtgtcttcaggaatagaagtagtgtggccattggaaggcatgcatgaaggaaga |
395 |
Q |
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| T |
38311713 |
gactcaattgagatttgagagctcctcggagacaaagtggttgctggtgtcttcaggaatagaagtagtgtggccattggaaggcatgcatgaaggaaga |
38311614 |
T |
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| Q |
396 |
ggtggttgagaatgaggtgcaagaactgatgcactccatgaccttggcagaaactccataggaacttgaggaccctacggcagaggggtgccgctgcttg |
495 |
Q |
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| T |
38311613 |
ggtggttgagaatgaggtgcaagaactgatgcactccatgaccttggcagaaactccataggaacttgaggaccctacggcagaggggtgccgctgcttg |
38311514 |
T |
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| Q |
496 |
gaactggttcaggtcgcagaaaattg |
521 |
Q |
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| T |
38311513 |
gaactggttcaggtcgcagaaaattg |
38311488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 485
Target Start/End: Complemental strand, 38267810 - 38267740
Alignment:
| Q |
415 |
caagaactgatgcactccatgaccttggcagaaactccataggaacttgaggaccctacggcagaggggtg |
485 |
Q |
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||||| |||| ||||||||||| |||| ||||||||||||||||||| |||||| || ||| ||||||||| |
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| T |
38267810 |
caagagctgaagcactccatgatcttgacagaaactccataggaactcgaggactctccggtagaggggtg |
38267740 |
T |
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