View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_high_9 (Length: 450)
Name: NF1841_high_9
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 84 - 446
Target Start/End: Complemental strand, 11545345 - 11544982
Alignment:
| Q |
84 |
aaattctagggtttaagagttgtcatcattttatatatacaattgaagcataaattttaaa-gaaatggtaaataccttaataactgaaatgcaattgcc |
182 |
Q |
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| T |
11545345 |
aaattctagggcataggagttgtcataattttatatacacaattgaagcataaattttaaaagaaatggtaaataccttgataattgaaatgcaattgcc |
11545246 |
T |
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| Q |
183 |
atgataaggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaaccattaaca |
282 |
Q |
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| T |
11545245 |
atgataaggtccatttgaaatgtgtgcaatttcatgcattggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaaccattaaca |
11545146 |
T |
|
| Q |
283 |
attatgtgaactcaaaatcaaactatcaattaaattagagtcattcaaagaaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactata |
382 |
Q |
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| T |
11545145 |
attatgtgaactcaaaatcaaactatcaattaaattagagtcattcaaataaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactata |
11545046 |
T |
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| Q |
383 |
gaagcatgcatcttttatctgaaaattttgaaaaatgaaacacacattcaaagaataatctacc |
446 |
Q |
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| T |
11545045 |
gaagcatgcatcttttatctgaaaattttgtaaaatgaaacacacattcaaagaagaaactacc |
11544982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 50 - 361
Target Start/End: Complemental strand, 11558840 - 11558529
Alignment:
| Q |
50 |
tataagtaattggatgttgtatactataccgaataaattctagggtttaagagttgtcatcattttatatatacaattgaagcataaattttaaagaaat |
149 |
Q |
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| T |
11558840 |
tataagtgattggatgttatatactataccgaataaactctagggtttaagagttgtcatcattttatatacacaattgaagcataaattttaaagaaat |
11558741 |
T |
|
| Q |
150 |
ggtaaataccttaataactgaaatgcaattgccatgataaggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccac |
249 |
Q |
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| T |
11558740 |
ggtaaataccttaataactgaaatgcagttgccatgatagggtccatttgaaatgtgtgcaatttcatgcattggatttccacaagaaagaccattccac |
11558641 |
T |
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| Q |
250 |
taaaagaaaattattaacaagtaa-ccattaacaattatgtgaactcaaaatcaaactatcaattaaattagagtcattcaaagaaaattatagagtaaa |
348 |
Q |
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| T |
11558640 |
tataacaaaattattaacaagtaacccgttaataattatgtgaactcaaaattaaactatcaattaaattagagtcattcaaa-taaattatatagtaaa |
11558542 |
T |
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| Q |
349 |
caatcatttggtc |
361 |
Q |
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||| ||| |||| |
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| T |
11558541 |
taattattgggtc |
11558529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 11545440 - 11545372
Alignment:
| Q |
20 |
aatggctggtccacatgnnnnnnntaattatataagtaattggatgttgtatactataccgaataaatt |
88 |
Q |
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| T |
11545440 |
aatggctggtccacatgaaaaaaataattatataagtaattggatgttgtatactataccgaataaatt |
11545372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 12064103 - 12064194
Alignment:
| Q |
159 |
cttaataactgaaatgcaattgccatgataaggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccact |
250 |
Q |
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| T |
12064103 |
cttaataattgaaatgcagtttccatgatagggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccact |
12064194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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