View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_1 (Length: 699)
Name: NF1841_low_1
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 272 - 624
Target Start/End: Original strand, 40819875 - 40820229
Alignment:
| Q |
272 |
acactacaatgttcctgtaagatctggtgataatctgtttcttttgtccaatattctttgttcttaacttctcagtagtattatttttccaagcttttta |
371 |
Q |
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| T |
40819875 |
acactacaatgttcctgtaagatctggtgataatctgtttcttttgtccaatattctttgttcttaacttctcagtggtattatttttccaagcttttta |
40819974 |
T |
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| Q |
372 |
ggggttacacttacacttccttctcagtcacatacatctaagttacataagattataatgtgaggatgataattgtgaactttgatacttatctcaagaa |
471 |
Q |
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| T |
40819975 |
ggggttacacttacacttccttctcagtcacatacatctaagttacataagattataatgcgaggatgataattgtgaactttgatacttatctccagaa |
40820074 |
T |
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| Q |
472 |
aatattaaatgagtggaataataatacaat-cttgagctaacaaacttctatgagttgatgatcctttatactggggagttttgaatcattgttttctaa |
570 |
Q |
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| T |
40820075 |
aatattaaatgagtggaataataatacaatccttgagctaacaaacttgtatgagttgatgatcctttatactggggagttttgaatcattgttttctaa |
40820174 |
T |
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| Q |
571 |
tgtgcttcctttatgaaggggagttcaag-aaatatttgaatccttgattgttac |
624 |
Q |
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| T |
40820175 |
tgtgcttcctttatgaaggggagttcaagaaaatatttgaatccttgattgttac |
40820229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 40819672 - 40819784
Alignment:
| Q |
32 |
tctgaaaaaattgtacgtcattttttaaaaagaatatataaattttgattggattcatcacacaaaaaggaagtattaaaattggtaaactcttgcattc |
131 |
Q |
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| T |
40819672 |
tctgaaaaaattgtacgtcattttttaaaaagaatatataaattttgattggattcatcacacaaaaaggaagtattaaaattggtaaactcttgcattc |
40819771 |
T |
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| Q |
132 |
ggagttagaagca |
144 |
Q |
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| T |
40819772 |
agagttagaagca |
40819784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 40819783 - 40819830
Alignment:
| Q |
176 |
catagtaatggatgcacacagcttactttctgaattctgatgatggaa |
223 |
Q |
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| T |
40819783 |
catagtaatggatgcacacagcttactttctgaattctgatgatggaa |
40819830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 680
Target Start/End: Original strand, 40820244 - 40820282
Alignment:
| Q |
642 |
gaacaattacttgattgatacttagttttgtgtctcatg |
680 |
Q |
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| T |
40820244 |
gaataattacttgattgatacttagttttgtgtctcatg |
40820282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 499
Target Start/End: Original strand, 40802115 - 40802198
Alignment:
| Q |
416 |
acataagattataatgtgaggatgataattgtgaactttgatacttatctcaagaaaatattaaatgagtggaataataataca |
499 |
Q |
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| T |
40802115 |
acataagaatatacagtaaggatgataatggtagacttcgatacacagctcaagaaaatataaaatcagtggaataataataca |
40802198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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