View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_11 (Length: 394)

Name: NF1841_low_11
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_11
NF1841_low_11
[»] chr5 (31 HSPs)
chr5 (280-381)||(36359557-36359658)
chr5 (280-381)||(34440783-34440884)
chr5 (36-86)||(38130329-38130379)
chr5 (36-87)||(12730200-12730251)
chr5 (41-85)||(11262071-11262115)
chr5 (36-87)||(42273546-42273597)
chr5 (41-87)||(9957634-9957680)
chr5 (41-87)||(16286281-16286327)
chr5 (280-334)||(38640769-38640823)
chr5 (40-86)||(39505449-39505495)
chr5 (41-86)||(8225361-8225406)
chr5 (36-85)||(25840762-25840811)
chr5 (36-83)||(104433-104480)
chr5 (36-87)||(32433570-32433621)
chr5 (41-87)||(20643911-20643957)
chr5 (41-87)||(34425227-34425273)
chr5 (280-334)||(43388089-43388143)
chr5 (41-85)||(842753-842797)
chr5 (41-85)||(37522777-37522821)
chr5 (41-85)||(37562949-37562993)
chr5 (36-87)||(12793020-12793071)
chr5 (36-87)||(35462911-35462962)
chr5 (280-334)||(8739212-8739266)
chr5 (280-334)||(16429115-16429169)
chr5 (36-86)||(25962645-25962695)
chr5 (36-81)||(38280748-38280793)
chr5 (41-85)||(6686313-6686357)
chr5 (36-87)||(17351277-17351329)
chr5 (41-81)||(30086746-30086786)
chr5 (31-87)||(41625720-41625776)
chr5 (41-85)||(43590149-43590193)
[»] chr3 (40 HSPs)
chr3 (280-381)||(48304077-48304178)
chr3 (36-87)||(46557374-46557425)
chr3 (41-120)||(11054454-11054533)
chr3 (280-334)||(8735267-8735321)
chr3 (280-334)||(9087508-9087562)
chr3 (41-87)||(14752385-14752431)
chr3 (44-86)||(37042566-37042608)
chr3 (280-334)||(44085440-44085494)
chr3 (41-85)||(23910641-23910685)
chr3 (36-87)||(7866655-7866706)
chr3 (43-125)||(36546435-36546518)
chr3 (43-125)||(36561797-36561880)
chr3 (36-86)||(37074860-37074910)
chr3 (36-78)||(50730016-50730058)
chr3 (36-78)||(50782794-50782836)
chr3 (41-87)||(54465068-54465114)
chr3 (41-86)||(22479212-22479257)
chr3 (36-81)||(47867087-47867132)
chr3 (36-84)||(6752571-6752619)
chr3 (41-85)||(23311739-23311783)
chr3 (41-85)||(30189503-30189547)
chr3 (51-87)||(32322409-32322445)
chr3 (43-87)||(33974738-33974782)
chr3 (48-84)||(47864125-47864161)
chr3 (36-72)||(51311587-51311623)
chr3 (40-87)||(2927189-2927236)
chr3 (48-87)||(6074983-6075022)
chr3 (36-87)||(19463975-19464026)
chr3 (49-84)||(29676896-29676931)
chr3 (41-87)||(1335024-1335070)
chr3 (52-86)||(20847460-20847494)
chr3 (41-87)||(41476506-41476551)
chr3 (280-334)||(45244471-45244525)
chr3 (280-334)||(45244680-45244734)
chr3 (36-86)||(53270133-53270183)
chr3 (54-87)||(6437980-6438013)
chr3 (41-86)||(46580451-46580496)
chr3 (41-85)||(2994576-2994620)
chr3 (36-84)||(16739310-16739358)
chr3 (52-84)||(51255105-51255137)
[»] chr4 (35 HSPs)
chr4 (280-378)||(50392409-50392507)
chr4 (1-87)||(16605006-16605092)
chr4 (36-87)||(39078052-39078103)
chr4 (36-85)||(35529568-35529617)
chr4 (41-85)||(41414789-41414833)
chr4 (36-87)||(17186988-17187039)
chr4 (36-87)||(48793832-48793883)
chr4 (331-381)||(46846235-46846285)
chr4 (42-87)||(55580562-55580607)
chr4 (41-85)||(2229175-2229219)
chr4 (41-85)||(14332687-14332731)
chr4 (41-85)||(28669180-28669224)
chr4 (40-84)||(42915427-42915471)
chr4 (36-87)||(5222457-5222508)
chr4 (36-87)||(32012486-32012537)
chr4 (36-87)||(52712973-52713024)
chr4 (41-87)||(8013281-8013327)
chr4 (41-87)||(37911798-37911844)
chr4 (36-85)||(30012112-30012161)
chr4 (36-80)||(21181122-21181166)
chr4 (41-85)||(47867807-47867851)
chr4 (36-87)||(4058609-4058660)
chr4 (36-87)||(12002841-12002892)
chr4 (40-87)||(35310953-35311000)
chr4 (36-87)||(39970148-39970199)
chr4 (36-87)||(50768355-50768406)
chr4 (41-86)||(5483489-5483535)
chr4 (41-87)||(29180576-29180622)
chr4 (44-82)||(29581590-29581628)
chr4 (36-86)||(37788362-37788412)
chr4 (41-87)||(53848381-53848427)
chr4 (36-81)||(19351740-19351785)
chr4 (40-85)||(47516382-47516427)
chr4 (41-85)||(7654555-7654599)
chr4 (41-85)||(26916253-26916297)
[»] chr1 (38 HSPs)
chr1 (280-381)||(38950355-38950450)
chr1 (36-87)||(44149045-44149096)
chr1 (41-87)||(15959858-15959904)
chr1 (280-334)||(43319215-43319269)
chr1 (1-87)||(28016922-28017008)
chr1 (2-87)||(4672796-4672881)
chr1 (36-87)||(7468166-7468217)
chr1 (36-87)||(47600253-47600304)
chr1 (41-87)||(6786734-6786780)
chr1 (41-85)||(2125967-2126011)
chr1 (27-87)||(6787195-6787255)
chr1 (41-85)||(12449154-12449198)
chr1 (41-85)||(32624193-32624237)
chr1 (41-85)||(39555773-39555817)
chr1 (36-87)||(1820312-1820363)
chr1 (36-87)||(26907285-26907336)
chr1 (43-86)||(33431458-33431501)
chr1 (36-86)||(47026392-47026442)
chr1 (1-87)||(6785353-6785439)
chr1 (40-85)||(42965999-42966044)
chr1 (41-85)||(35691321-35691365)
chr1 (41-85)||(43667487-43667531)
chr1 (36-87)||(298880-298931)
chr1 (36-87)||(24728840-24728891)
chr1 (36-87)||(25990661-25990712)
chr1 (36-87)||(28916711-28916762)
chr1 (36-87)||(29488661-29488712)
chr1 (36-87)||(40219970-40220021)
chr1 (41-87)||(5950355-5950401)
chr1 (41-87)||(15285717-15285763)
chr1 (280-334)||(43319004-43319058)
chr1 (40-86)||(51339096-51339142)
chr1 (54-87)||(16854032-16854065)
chr1 (41-74)||(32983357-32983390)
chr1 (54-87)||(46542878-46542911)
chr1 (169-209)||(1800965-1801005)
chr1 (36-76)||(3875236-3875276)
chr1 (41-85)||(24190401-24190444)
[»] chr2 (32 HSPs)
chr2 (27-87)||(29524244-29524304)
chr2 (36-84)||(40808925-40808973)
chr2 (36-84)||(5280693-5280741)
chr2 (36-87)||(25571941-25571992)
chr2 (36-87)||(33198847-33198898)
chr2 (41-87)||(19263996-19264042)
chr2 (41-85)||(6110387-6110431)
chr2 (40-87)||(18454962-18455009)
chr2 (36-87)||(45660259-45660310)
chr2 (280-334)||(25715446-25715500)
chr2 (41-87)||(38070912-38070958)
chr2 (54-87)||(13822970-13823003)
chr2 (36-85)||(18834104-18834153)
chr2 (41-85)||(28599335-28599379)
chr2 (41-85)||(41528186-41528230)
chr2 (36-87)||(8784308-8784359)
chr2 (41-87)||(14873857-14873904)
chr2 (36-87)||(28858206-28858257)
chr2 (36-87)||(33635249-33635300)
chr2 (41-84)||(45085188-45085231)
chr2 (40-86)||(6766149-6766195)
chr2 (280-334)||(9847439-9847493)
chr2 (36-82)||(11616925-11616971)
chr2 (36-86)||(15858802-15858852)
chr2 (41-87)||(21539670-21539716)
chr2 (41-87)||(43451429-43451475)
chr2 (48-85)||(3201265-3201302)
chr2 (281-334)||(9847231-9847284)
chr2 (41-86)||(15068660-15068705)
chr2 (36-81)||(35832331-35832376)
chr2 (36-84)||(4033867-4033915)
chr2 (41-85)||(35517052-35517096)
[»] chr7 (33 HSPs)
chr7 (36-87)||(47778669-47778720)
chr7 (41-85)||(16562678-16562722)
chr7 (41-85)||(16602940-16602984)
chr7 (40-84)||(46760443-46760487)
chr7 (36-87)||(36576330-36576381)
chr7 (41-120)||(47557933-47558012)
chr7 (41-87)||(30082276-30082322)
chr7 (41-86)||(25944474-25944519)
chr7 (41-85)||(18102459-18102503)
chr7 (36-87)||(15995611-15995662)
chr7 (41-120)||(19912955-19913034)
chr7 (41-84)||(39174181-39174224)
chr7 (1-84)||(9157990-9158073)
chr7 (41-87)||(18800919-18800965)
chr7 (40-86)||(28843655-28843701)
chr7 (36-85)||(35069047-35069096)
chr7 (41-85)||(14805800-14805844)
chr7 (41-85)||(15252794-15252838)
chr7 (43-87)||(21761939-21761983)
chr7 (43-87)||(38260231-38260275)
chr7 (41-85)||(45485883-45485927)
chr7 (1-85)||(4910810-4910894)
chr7 (36-87)||(22631984-22632035)
chr7 (36-82)||(31280611-31280658)
chr7 (48-87)||(31550103-31550142)
chr7 (36-87)||(41890411-41890462)
chr7 (36-87)||(45598816-45598867)
chr7 (37-87)||(15739457-15739506)
chr7 (43-85)||(37767214-37767256)
chr7 (41-87)||(44600358-44600404)
chr7 (54-87)||(6190942-6190975)
chr7 (41-85)||(25737813-25737857)
chr7 (41-85)||(35923182-35923226)
[»] chr8 (35 HSPs)
chr8 (1-87)||(35525493-35525579)
chr8 (36-87)||(4047108-4047159)
chr8 (36-84)||(30576041-30576089)
chr8 (41-87)||(24510883-24510929)
chr8 (41-87)||(34890393-34890439)
chr8 (41-85)||(7022591-7022635)
chr8 (41-85)||(7858456-7858500)
chr8 (41-87)||(8107837-8107884)
chr8 (36-87)||(13144175-13144226)
chr8 (36-87)||(24892733-24892784)
chr8 (36-87)||(36190666-36190717)
chr8 (36-87)||(36537974-36538025)
chr8 (280-334)||(7971016-7971070)
chr8 (41-87)||(13143659-13143705)
chr8 (41-87)||(17713137-17713183)
chr8 (280-334)||(24627655-24627709)
chr8 (41-86)||(8711772-8711817)
chr8 (43-84)||(15958105-15958146)
chr8 (36-84)||(7499623-7499671)
chr8 (41-85)||(26954592-26954636)
chr8 (2-83)||(28348511-28348591)
chr8 (280-332)||(41530756-41530808)
chr8 (36-84)||(41809017-41809065)
chr8 (36-87)||(11043973-11044024)
chr8 (36-87)||(16635355-16635406)
chr8 (36-87)||(16635491-16635542)
chr8 (36-87)||(24612674-24612725)
chr8 (36-87)||(35344282-35344333)
chr8 (36-86)||(29920485-29920535)
chr8 (41-85)||(41086574-41086619)
chr8 (51-87)||(2238791-2238827)
chr8 (41-85)||(8673298-8673342)
chr8 (41-85)||(20051506-20051549)
chr8 (36-84)||(25321780-25321828)
chr8 (54-86)||(43216587-43216619)
[»] scaffold0009 (1 HSPs)
scaffold0009 (36-84)||(157694-157742)
[»] scaffold0132 (2 HSPs)
scaffold0132 (36-86)||(910-960)
scaffold0132 (36-86)||(8870-8920)
[»] scaffold0016 (1 HSPs)
scaffold0016 (281-334)||(205830-205883)
[»] scaffold0045 (1 HSPs)
scaffold0045 (41-85)||(77887-77931)
[»] chr6 (7 HSPs)
chr6 (41-85)||(3095908-3095952)
chr6 (41-85)||(21542348-21542392)
chr6 (41-85)||(34177828-34177872)
chr6 (41-85)||(35129242-35129286)
chr6 (37-87)||(1576870-1576919)
chr6 (36-82)||(2851479-2851525)
chr6 (36-84)||(30949051-30949099)
[»] scaffold0442 (1 HSPs)
scaffold0442 (41-81)||(9979-10019)
[»] scaffold0018 (1 HSPs)
scaffold0018 (41-84)||(154792-154835)
[»] scaffold0774 (1 HSPs)
scaffold0774 (41-81)||(3615-3655)
[»] scaffold0300 (1 HSPs)
scaffold0300 (41-85)||(760-804)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 36359658 - 36359557
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 379  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  36359658 catggtgttgatgcaatccagattacgtaatccagacaacaccatcaccaattcttgtgtaaacagagggtgtgatggctggagctaaggcagttgttgt 36359559  T
Q  380 tg 381  Q
    ||    
T  36359558 tg 36359557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 34440783 - 34440884
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 379  Q
    ||||||| ||||||||||  ||||||||||| |||||||  ||| ||||||||||| |||||| |||| || ||||||||||||||||||||||||||||    
T  34440783 catggtgctgatgcaatctggattacgtaattcagacagtgccagcaccaattcttatgtaaagagagggtatgatggctggagctaaggcagctgttgt 34440882  T
Q  380 tg 381  Q
    ||    
T  34440883 tg 34440884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 38130329 - 38130379
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38130329 atagaataaaaatttatcttttttacttatattttgggacaaagaaaatga 38130379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 12730200 - 12730251
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  12730200 ataggataaaagtttgtcttttttacttatattttgggacaaagaaaatgag 12730251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 11262071 - 11262115
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  11262071 ataaaagtttgtcttttttacttatattttgggacaaagaaaatg 11262115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 42273597 - 42273546
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  42273597 ataggataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 42273546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 9957634 - 9957680
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  9957634 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 9957680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 16286281 - 16286327
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  16286281 ataaaagtttgtcttttttacttatattttgagacaaagaaaatgag 16286327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 38640769 - 38640823
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  38640769 catggtgctgatgcaatccggattacgtaatccggacagcaccaacaccaattct 38640823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 39505449 - 39505495
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  39505449 aataaaagtttgtcttttttgcttatattttgggacaaagaaaatga 39505495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 8225406 - 8225361
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||    
T  8225406 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatga 8225361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 25840811 - 25840762
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  25840811 atagaataaaagtttgtcatttttgcttatattttgggacaaagaaaatg 25840762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 104433 - 104480
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaa 83  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  104433 ataggataaaagtttgtcttttttacttatattttgggacagagaaaa 104480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 32433621 - 32433570
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  32433621 atagtataaaaatttgtcttttttgcttatattttgagacaaagaatatgag 32433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 20643957 - 20643911
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||    
T  20643957 ataaaagtttgtcttttttgcttatattttgggataaagaaaatgag 20643911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 34425273 - 34425227
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||||||| ||||||||||||||||    
T  34425273 ataaaagtttgtcttttttgcttatattttaggacaaagaaaatgag 34425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 43388143 - 43388089
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||| ||||||||||| ||||||| |||| ||||||||||    
T  43388143 catggtgctgatgcaatccggattacgtaattcagacagtaccaacaccaattct 43388089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 842753 - 842797
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||    
T  842753 ataaaagtttatcttttttgcttatattttgggacaaagaaaatg 842797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 37522777 - 37522821
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| ||||||||||||||| |||||||||    
T  37522777 ataaaagtttgtcttttttgcttatattttgggacgaagaaaatg 37522821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 37562949 - 37562993
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| ||||||||||||||| |||||||||    
T  37562949 ataaaagtttgtcttttttgcttatattttgggacgaagaaaatg 37562993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 12793020 - 12793071
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| ||||| |||||| |||||||||||| ||||||||||||||    
T  12793020 ataggataaaagtttgtattttttgcttatattttggaacaaagaaaatgag 12793071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 35462911 - 35462962
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  35462911 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 35462962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 8739266 - 8739212
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||| | |||||||||||||| || |||||| ||||||||||    
T  8739266 catggtgctgatgcaattcggattacgtaatccaaactgcaccagcaccaattct 8739212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 16429115 - 16429169
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||| | | |||||||||||||| ||||||||| ||||||||||    
T  16429115 catggtgctgatgcagttcggattacgtaatccaaacagcaccaacaccaattct 16429169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 25962645 - 25962695
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| ||||| |||||| ||||||||||| ||||||||||||||    
T  25962645 atagcataaaagtttgtattttttgcttatattttgagacaaagaaaatga 25962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 38280793 - 38280748
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaa 81  Q
    |||| |||||| ||||||||||||| |||||||||| |||||||||    
T  38280793 ataggataaaagtttgtcttttttatttatattttgagacaaagaa 38280748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 6686357 - 6686313
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||    
T  6686357 ataaaagtttatcttttttgtttatattttgggacaaagaaaatg 6686313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 17351329 - 17351277
Alignment:
Q  36 atagaataaaaatttgtcttttttacttata-ttttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||| | |||||||||||||||||||||    
T  17351329 ataggataaaagtttgtcttttttgcttacaattttgggacaaagaaaatgag 17351277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 30086746 - 30086786
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaa 81  Q
    |||||| || ||||||||||||||||||||| |||||||||    
T  30086746 ataaaagttggtcttttttacttatattttgagacaaagaa 30086786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 41625720 - 41625776
Alignment:
Q  31 aatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||||||||| ||||||||  ||| |||||| || ||||||||||||    
T  41625720 aataaatagaataaaaatttatcttttttgattacattttgagataaagaaaatgag 41625776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 43590149 - 43590193
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||| |||||| |||||||||||| ||||||||||||    
T  43590149 ataaaagtttgtattttttgcttatattttggtacaaagaaaatg 43590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 48304077 - 48304178
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 379  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  48304077 catggtggtgatgcaatccggattacgtaatccagacagcaccatcaccaattcttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgt 48304176  T
Q  380 tg 381  Q
    ||    
T  48304177 tg 48304178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 46557374 - 46557425
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  46557374 atagaataaaaatttgtcttttttacttatattttaagacaaagaaaatgag 46557425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 11054454 - 11054533
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgagnnnnnnnncttacattatgggacggagggagta 120  Q
    |||||| |||||||||||| ||||||||||||||||||||||||| |        |||| ||||||||||||||||||||    
T  11054454 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttggcttatattatgggacggagggagta 11054533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 8735267 - 8735321
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  8735267 catggtgttgatgcaatccagattacgaaattcggacagcaccagcaccaattct 8735321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 9087508 - 9087562
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  9087508 catggtgttgatgcaatccagattacgaaattcggacagcaccagcaccaattct 9087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 14752385 - 14752431
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  14752385 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 14752431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 37042566 - 37042608
Alignment:
Q  44 aaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  37042566 aaaatttgtcttttttccttatattttgggacaaagaaaatga 37042608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 44085494 - 44085440
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||    
T  44085494 catggtgctgatgcaatccagattacgtaatccagacaacacaagcaccaattct 44085440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 23910641 - 23910685
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||    
T  23910641 ataaaaatttgtcttttttgcttatattttgggacaaaaaaaatg 23910685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 7866655 - 7866706
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  7866655 ataggataaaagtttgtcttttttgtttatattttgggacaaagaaaatgag 7866706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 36546518 - 36546435
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaatgag-nnnnnnnncttacattatgggacggagggagtagttta 125  Q
    |||| |||||||||||| ||||||||||||||||||||||||| |         |||| |||||||||||||||||||||||||    
T  36546518 aaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtagttta 36546435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 36561797 - 36561880
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaatgag-nnnnnnnncttacattatgggacggagggagtagttta 125  Q
    |||| |||||||||||| ||||||||||||||||||||||||| |         |||| |||||||||||||||||||||||||    
T  36561797 aaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtagttta 36561880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 37074910 - 37074860
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||||||||    
T  37074910 ataggataaaagtttgtcttttttgcttatatttcgggacaaagaaaatga 37074860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 50730058 - 50730016
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaa 78  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  50730058 ataggataaaaatttatcttttttacttatattttgggacaaa 50730016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 50782794 - 50782836
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaa 78  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  50782794 ataggataaaaatttatcttttttacttatattttgggacaaa 50782836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 54465068 - 54465114
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||| |||||||| |||||||||| ||||||||||||||||    
T  54465068 ataaaaatttatcttttttgcttatattttaggacaaagaaaatgag 54465114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 22479212 - 22479257
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||    
T  22479212 ataaaagtttgtcttttttgcttataatttgggacaaagaaaatga 22479257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 47867087 - 47867132
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaa 81  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||    
T  47867087 ataggataaaaatttgtcttttttacttacattttgggataaagaa 47867132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 6752619 - 6752571
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||| |||||| ||||||||||||||||| ||||| |||||||||||||    
T  6752619 ataggataaaagtttgtcttttttacttaaattttaggacaaagaaaat 6752571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 23311739 - 23311783
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||    
T  23311739 ataaaagtttgacttttttgcttatattttgggacaaagaaaatg 23311783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 30189547 - 30189503
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||    
T  30189547 ataaaaatttatcttttttattaatattttgggacaaagaaaatg 30189503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 32322409 - 32322445
Alignment:
Q  51 gtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||||||||||||| |||||||||||||||    
T  32322409 gtcttttttacttatattttgagacaaagaaaatgag 32322445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 33974738 - 33974782
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||    
T  33974738 aaaagtttgtcttttttgcttatattttgagacaaagaaaatgag 33974782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 47864161 - 47864125
Alignment:
Q  48 tttgtcttttttacttatattttgggacaaagaaaat 84  Q
    ||||||||||||| |||||||||||||||||||||||    
T  47864161 tttgtcttttttatttatattttgggacaaagaaaat 47864125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 51311623 - 51311587
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgg 72  Q
    |||| ||||||||||||||||||||||||||||||||    
T  51311623 ataggataaaaatttgtcttttttacttatattttgg 51311587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 2927236 - 2927189
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||| |||||||||||| ||||||||||  |||||||||||||||    
T  2927236 aataaaagtttgtcttttttgcttatattttaagacaaagaaaatgag 2927189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 6075022 - 6074983
Alignment:
Q  48 tttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  6075022 tttgtcttttttgcttatattttgggacaatgaaaatgag 6074983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 19464026 - 19463975
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| |||||||||| | ||||||||||||||  |||||||||||    
T  19464026 atagaataaaagtttgtcttttctgcttatattttgggatgaagaaaatgag 19463975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 29676896 - 29676931
Alignment:
Q  49 ttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||||||||||||||| |||||||||||||||||    
T  29676896 ttgtcttttttacttataatttgggacaaagaaaat 29676931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 1335070 - 1335024
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  1335070 ataaaaattggtcttttttgcttatattttgagacaaagaatatgag 1335024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 20847460 - 20847494
Alignment:
Q  52 tcttttttacttatattttgggacaaagaaaatga 86  Q
    ||||||||||||||| |||||||||||||||||||    
T  20847460 tcttttttacttataatttgggacaaagaaaatga 20847494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 41476506 - 41476551
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  41476506 ataaaagtttgtctttttta-ttatattttgggacaaacaaaatgag 41476551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 45244471 - 45244525
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||  ||||||||||||| |||||||| | ||||||||||    
T  45244471 catggtgctgatgcaatctggattacgtaatccggacagcacgagcaccaattct 45244525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 45244680 - 45244734
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| | ||||||||| ||||||||||||| ||||  |||||||||||||||    
T  45244680 catggtgctaatgcaatccggattacgtaatccggacaataccatcaccaattct 45244734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 53270183 - 53270133
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    ||||||||||||||| | |||||| |||||||||||| | |||||||||||    
T  53270183 atagaataaaaatttattttttttgcttatattttggaataaagaaaatga 53270133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 6438013 - 6437980
Alignment:
Q  54 ttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||||||||||||||||||    
T  6438013 ttttttgcttatattttgggacaaagaaaatgag 6437980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 46580496 - 46580451
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||||| || ||||||||||||||||||||| ||||||||| ||||    
T  46580496 ataaaagttggtcttttttacttatattttgagacaaagaatatga 46580451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 2994576 - 2994620
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||| ||||| |||||| ||||||||||||||||||    
T  2994576 ataaaagtttgtcattttttcttataatttgggacaaagaaaatg 2994620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 16739310 - 16739358
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||| |||||| || ||||||||| ||||||||||| ||||||||||||    
T  16739310 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaat 16739358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 51255137 - 51255105
Alignment:
Q  52 tcttttttacttatattttgggacaaagaaaat 84  Q
    |||||||||||||||||||| ||||||||||||    
T  51255137 tcttttttacttatattttgagacaaagaaaat 51255105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 50392507 - 50392409
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttg 378  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| || |||||    
T  50392507 catggtgctgatgcaatccggattacgtaatccagacagcaccatcaccaattcttgtgtaaacagagggtgtgattgctggagctaaggtagttgttg 50392409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 16605006 - 16605092
Alignment:
Q  1 cttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||       ||||| || |||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  16605006 cttggaaaagagattttttaaaaaaacaatattaaatagcataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 16605092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39078103 - 39078052
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  39078103 ataggataaaagtttgtcttttttacttatattttgggacaaagaaaatgag 39078052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 35529617 - 35529568
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  35529617 atagaataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 35529568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 41414789 - 41414833
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  41414789 ataaaagtttgtcttttttacttatattttgggacaaagaaaatg 41414833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 17186988 - 17187039
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  17186988 ataggataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 17187039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 48793832 - 48793883
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  48793832 atagaataaaagtttgtcttttatgcttatattttgggacaaagaaaatgag 48793883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 46846235 - 46846285
Alignment:
Q  331 ttcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgttg 381  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  46846235 ttcttgtgcaaacagagggtgtgatggctggagctaaggcagctgttgttg 46846285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 55580607 - 55580562
Alignment:
Q  42 taaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||    
T  55580607 taaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 55580562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 2229219 - 2229175
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  2229219 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 2229175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 14332731 - 14332687
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  14332731 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 14332687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 28669180 - 28669224
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  28669180 ataaaaatttgtcctttttgcttatattttgggacaaagaaaatg 28669224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 42915471 - 42915427
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  42915471 aataaaagtttgtcttttttgcttatattttgggacaaagaaaat 42915427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 5222457 - 5222508
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || |||||||||||||||||||| ||||||||||||||||    
T  5222457 atagtataaaagttggtcttttttacttatattttaggacaaagaaaatgag 5222508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 32012486 - 32012537
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| ||||||||||| |||||||||||||||    
T  32012486 atagcataaaagtttgtcttttttgcttatattttgagacaaagaaaatgag 32012537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 52713024 - 52712973
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  52713024 atagcataaaaattggtcttttttacttatattttgagacaaagaatatgag 52712973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 8013281 - 8013327
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||    
T  8013281 ataaaagttggtcttttttacttataatttgggacaaagaaaatgag 8013327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 37911844 - 37911798
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||    
T  37911844 ataaaatttagtcttttttacttataatttgggacaaagaaaatgag 37911798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 30012112 - 30012161
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||||||| ||  |||||||| |||||||||||||||||||||||||    
T  30012112 atagaataaaagttgatcttttttgcttatattttgggacaaagaaaatg 30012161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 21181122 - 21181166
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaaga 80  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||    
T  21181122 ataggataaaaatttgtcttttttatttataatttgggacaaaga 21181166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 47867851 - 47867807
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||    
T  47867851 ataaaagtttttcttttttgcttatattttgggacaaagaaaatg 47867807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 4058660 - 4058609
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||||||||| ||||||||||| ||||    
T  4058660 ataggataaaagtttgtcttttttgcttatattttaggacaaagaaagtgag 4058609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 12002841 - 12002892
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| |||||||||||| |||| |||| |||||||||||| ||||    
T  12002841 atagaataaaagtttgtcttttttgcttacatttagggacaaagaaagtgag 12002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 35310953 - 35311000
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||| |||||||||||| ||||||||||  |||||||||||||||    
T  35310953 aataaaagtttgtcttttttgcttatattttaagacaaagaaaatgag 35311000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 39970148 - 39970199
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  39970148 atagcataaaaattagtcttttttgcttatattttgagacaaagaatatgag 39970199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 50768406 - 50768355
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  50768406 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 50768355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 5483489 - 5483535
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggac-aaagaaaatga 86  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||    
T  5483489 ataaaaatttgtcttttttacttacattttgagacaaaagaaaatga 5483535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 29180576 - 29180622
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| ||||||||||| ||||||||| |||||    
T  29180576 ataaaagtttgtcttttttgcttatattttgagacaaagaatatgag 29180622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 29581590 - 29581628
Alignment:
Q  44 aaaatttgtcttttttacttatattttgggacaaagaaa 82  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  29581590 aaaatttgtcttttttatttataatttgggacaaagaaa 29581628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 37788412 - 37788362
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| || ||||||||||||||||||||| || |||||||||||    
T  37788412 atagcataaaagttggtcttttttacttatattttgagataaagaaaatga 37788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 53848427 - 53848381
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| || |||||||||||||||| |||||||||||||| |||||    
T  53848427 ataaaagttggtcttttttacttataatttgggacaaagaagatgag 53848381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 19351785 - 19351740
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaa 81  Q
    ||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  19351785 atagaataaaagtttgtctttttttcttacattttgggataaagaa 19351740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 47516382 - 47516427
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||| || ||||||||| |||||| ||||||||||||||||||    
T  47516382 aataaaagttggtcttttttgcttataatttgggacaaagaaaatg 47516427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 7654599 - 7654555
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||| ||| ||||||||||    
T  7654599 ataaaagtttgtcttttttgcttatattttaggataaagaaaatg 7654555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 26916297 - 26916253
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||||    
T  26916297 ataaaagtttatcttttttgcttatattttgagacaaagaaaatg 26916253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 38950355 - 38950450
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 379  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||      ||||||||| |||| |||||||||||||||||||||||||||||||    
T  38950355 catggtgttgatgcaattcggattacgtaatccagacagcagcatcac------ttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgt 38950448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 44149045 - 44149096
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  44149045 atagaataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 44149096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 15959858 - 15959904
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  15959858 ataaaaatttgtcttttttgcttatattttgggacaaagaaaatgag 15959904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 43319269 - 43319215
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  43319269 catggtgctgatgcaatccggattacgtaatccggacagcaccatcaccaattct 43319215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28016922 - 28017008
Alignment:
Q  1 cttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||       ||| | || |||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  28016922 cttggaaaagagatttttttaaaaaacaagattaaataggataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 28017008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 4672881 - 4672796
Alignment:
Q  2 ttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||||||||||       ||| | || |||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  4672881 ttggaaaagagatttttttaaaaaacaagattaaataggataaaaatttatcttttttgcttatattttgggacaaagaaaatgag 4672796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 7468166 - 7468217
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  7468166 ataggataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 7468217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 47600253 - 47600304
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  47600253 ataggataaaaatttgtcttttttacttatactttcggacaaagaaaatgag 47600304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 6786780 - 6786734
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  6786780 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 6786734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 2126011 - 2125967
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  2126011 ataaaagtttgtcttttttacttatattttaggacaaagaaaatg 2125967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 6787195 - 6787255
Alignment:
Q  27 caataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||| || |||| |||||| |||||||||||| |||||||||||||| ||||||||||||    
T  6787195 caatattaaataggataaaagtttgtcttttttgcttatattttgggataaagaaaatgag 6787255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 12449154 - 12449198
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  12449154 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 12449198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 32624193 - 32624237
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  32624193 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 32624237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 39555773 - 39555817
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  39555773 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 39555817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 1820363 - 1820312
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  1820363 ataggataaaagtttgtcttttttacttatattttaggataaagaaaatgag 1820312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 26907285 - 26907336
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||||||||||||||| |||||||||||||||    
T  26907285 atagcataaaagttggtcttttttacttatattttgagacaaagaaaatgag 26907336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 33431501 - 33431458
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  33431501 aaaattttgtcttttttacttatattttggaacaaagaaaatga 33431458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 47026442 - 47026392
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| ||||||||||||||||||||||| | |||||||||||||    
T  47026442 ataggataaaagtttgtcttttttacttatattttagaacaaagaaaatga 47026392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6785439 - 6785353
Alignment:
Q  1 cttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||       ||| | || |||| |||||| ||| |||||||| ||||||||||| |||||||||||||||    
T  6785439 cttggaaaagagattttttttaaaaacaagattaaataggataaaagtttatcttttttgcttatattttgtgacaaagaaaatgag 6785353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 42965999 - 42966044
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||||    
T  42965999 aataaaagtttgtcttttttacttgtattttgggacaaataaaatg 42966044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 35691365 - 35691321
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||    
T  35691365 ataaaaatttattttttttacttatattttggtacaaagaaaatg 35691321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 43667487 - 43667531
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||    
T  43667487 ataaaagtttgtcttttttgcttatattttgagacaaagaaaatg 43667531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 298880 - 298931
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||| |||||| |||||||||||||||    
T  298880 ataggataaaactttgtcttttttgcttacattttgagacaaagaaaatgag 298931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 24728840 - 24728891
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||||||| | | |||| ||||||||||| |||||||||||||||    
T  24728840 atagaataaaaatttatttatttttcttatattttgagacaaagaaaatgag 24728891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 25990712 - 25990661
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  25990712 atagcataaaaattggtcttttttgcttatattttgagacaaagaatatgag 25990661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 28916711 - 28916762
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||||||||||||||| |||||| || |||||    
T  28916711 atagcataaaagtttgtcttttttacttatattttgagacaaaaaatatgag 28916762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 29488712 - 29488661
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  29488712 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 29488661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 40220021 - 40219970
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  40220021 atagcataaaaattagtcttttttgcttatattttgagacaaagaatatgag 40219970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 5950401 - 5950355
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||||||||||| ||| || | ||||||||||||||||||    
T  5950401 ataaaaatttgtcttttttgcttgtaatctgggacaaagaaaatgag 5950355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 15285763 - 15285717
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  15285763 ataaaaattggtcttttttgcttatattttgagacaaagaatatgag 15285717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 43319058 - 43319004
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||| ||||||||||||  |||| ||||| ||||||||||    
T  43319058 catggtgctgatgcaatccggattacgtaatctggacaacaccagcaccaattct 43319004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 51339096 - 51339142
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    ||||||| || |||||||||||||||| |||| ||||||||||||||    
T  51339096 aataaaagttagtcttttttacttataatttgcgacaaagaaaatga 51339142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 16854065 - 16854032
Alignment:
Q  54 ttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||||||||||||||||||    
T  16854065 ttttttgcttatattttgggacaaagaaaatgag 16854032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 32983357 - 32983390
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttggga 74  Q
    ||||||||||||||||||| ||||||||||||||    
T  32983357 ataaaaatttgtcttttttgcttatattttggga 32983390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 46542911 - 46542878
Alignment:
Q  54 ttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||||||||||||||||||    
T  46542911 ttttttgcttatattttgggacaaagaaaatgag 46542878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 1800965 - 1801005
Alignment:
Q  169 cagggccgtctcaaacaattcgttggcacgattttaatctt 209  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  1800965 cagggccgtcttaaacaattcgttggccccattttaatctt 1801005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 3875236 - 3875276
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggaca 76  Q
    |||| ||||||||||||||||||| |||||||| |||||||    
T  3875236 ataggataaaaatttgtcttttttgcttatattatgggaca 3875276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 24190444 - 24190401
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||    
T  24190444 ataaaagtttgtctttttt-cttatattttggtacaaagaaaatg 24190401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 29524244 - 29524304
Alignment:
Q  27 caataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29524244 caatattaaatagaataaaagtttgtcttttttacttatattttgggacaaagaaaatgag 29524304  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 40808925 - 40808973
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40808925 atagaataaaaatttgtcttttttgcttatattttgggacaaagaaaat 40808973  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 5280693 - 5280741
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  5280693 ataggataaaaatttgtcttttttgcttatattttgggacaaagaaaat 5280741  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 25571992 - 25571941
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  25571992 atagaataaaagtttgttttttttgcttatattttgggacaaagaaaatgag 25571941  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 33198847 - 33198898
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  33198847 ataggataaaattttgtcttttttgcttatattttgggacaaagaaaatgag 33198898  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 19264042 - 19263996
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  19264042 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 19263996  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 6110387 - 6110431
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  6110387 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 6110431  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 18455009 - 18454962
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  18455009 aataaaaatttatcttttttgcttatattttaggacaaagaaaatgag 18454962  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 45660310 - 45660259
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| ||||| |||||| |||||||||||||||||||||||||||    
T  45660310 ataggataaaagtttgttttttttgcttatattttgggacaaagaaaatgag 45660259  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 25715446 - 25715500
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  25715446 catggtgctgatgcaatccggattacgtaatccggacaacaccaacaccaattct 25715500  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 38070958 - 38070912
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||    
T  38070958 ataaaagtttgtcttttttgcttataatttgggacaaagaaaatgag 38070912  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 13822970 - 13823003
Alignment:
Q  54 ttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||||||||||||||||||||||||||    
T  13822970 ttttttacttatattttgggacaaagaaaatgag 13823003  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 18834104 - 18834153
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||||||| ||  |||||||| |||||||||||||||||||||||||    
T  18834104 atagaataaaagttgatcttttttgcttatattttgggacaaagaaaatg 18834153  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 28599335 - 28599379
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||    
T  28599335 ataaaagtttgtcttttttgattatattttgggacaaagaaaatg 28599379  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 41528230 - 41528186
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||    
T  41528230 ataaaagtttgtcttttttgcttatattttgggacaaacaaaatg 41528186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 8784359 - 8784308
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||||||||||||||| ||||||||| |||||    
T  8784359 atagcataaaagttggtcttttttacttatattttgagacaaagaatatgag 8784308  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 14873904 - 14873857
Alignment:
Q  41 ataaaaatttgtctttttta-cttatattttgggacaaagaaaatgag 87  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||    
T  14873904 ataaaaatttgtttttttttgcttatattttgggacaaagaaaatgag 14873857  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 28858257 - 28858206
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| ||||| |||||| |||||||||| ||||||||||||||||    
T  28858257 ataggataaaagtttgtattttttgcttatattttaggacaaagaaaatgag 28858206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 33635300 - 33635249
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  33635300 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 33635249  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 45085231 - 45085188
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||    
T  45085231 ataaaagtttatcttttttgcttatattttgggacaaagaaaat 45085188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 6766149 - 6766195
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    ||||||||||| ||||||||||||| ||| ||| |||||||||||||    
T  6766149 aataaaaatttatcttttttacttacattctggaacaaagaaaatga 6766195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 9847493 - 9847439
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||  ||||||||||||  |||||||||| ||||||||||    
T  9847493 catggtgctgatgcaatctggattacgtaatctggacagcaccaacaccaattct 9847439  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 11616971 - 11616925
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaa 82  Q
    |||| |||||| ||| ||||||||||||||||||| |||||||||||    
T  11616971 ataggataaaagtttatcttttttacttatattttaggacaaagaaa 11616925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 15858802 - 15858852
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| || ||||||||||||||||||||| ||||||||| ||||    
T  15858802 atagcataaaatttggtcttttttacttatattttgagacaaagaatatga 15858852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 21539716 - 21539670
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  21539716 ataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 21539670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 43451475 - 43451429
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||  ||||||||||||||||||||  ||||||||||||||    
T  43451475 ataaaaattgatcttttttacttatattttgatacaaagaaaatgag 43451429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 3201302 - 3201265
Alignment:
Q  48 tttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  3201302 tttgtcttttttgcttatattttgggataaagaaaatg 3201265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 9847284 - 9847231
Alignment:
Q  281 atggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    |||||| ||||||||||| ||||||||||||  |||| ||||| ||||||||||    
T  9847284 atggtgctgatgcaatccggattacgtaatctggacaacaccaacaccaattct 9847231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 15068705 - 15068660
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||||||||  |||||||| ||||||||||| ||||||||||||||    
T  15068705 ataaaaattgatcttttttgcttatattttgagacaaagaaaatga 15068660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 35832376 - 35832331
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaa 81  Q
    |||| |||||||| |||||||||| ||||||||||| |||||||||    
T  35832376 atagcataaaaatatgtcttttttgcttatattttgagacaaagaa 35832331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 4033867 - 4033915
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||| |||||||||  |||||||| ||||||||||| ||||||||||||    
T  4033867 atagcataaaaattgatcttttttgcttatattttgagacaaagaaaat 4033915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 35517096 - 35517052
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||| || |||||||||    
T  35517096 ataaaagtttgtcttttttgcttatattttggtacgaagaaaatg 35517052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 47778720 - 47778669
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47778720 atagaataaaaatttgtcttttttgcttatattttgggacaaagaaaatgag 47778669  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 16562722 - 16562678
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16562722 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 16562678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 16602940 - 16602984
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16602940 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 16602984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 46760443 - 46760487
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  46760443 aataaaagtttgtcttttttacttatattttgggacaaagaaaat 46760487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 36576381 - 36576330
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||||||||    
T  36576381 atagcataaaagtttgtcttttttacttatattttgagacaaagaaaatgag 36576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 47557933 - 47558012
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgagnnnnnnnncttacattatgggacggagggagta 120  Q
    |||||| |||||||||||| ||||||||||||||||||||||||| |        |||| ||||||||||||||||||||    
T  47557933 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttcttatattatgggacggagggagta 47558012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 30082322 - 30082276
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  30082322 ataaaaattggtcttttttgcttatattttgggacaaagaaaatgag 30082276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 25944519 - 25944474
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||    
T  25944519 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatga 25944474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 18102503 - 18102459
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  18102503 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 18102459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 15995662 - 15995611
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||||||| ||||||| |||||||||| ||| ||||    
T  15995662 atagaataaaaatttgtctttttttcttatatattgggacaaacaaagtgag 15995611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 19912955 - 19913034
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgagnnnnnnnncttacattatgggacggagggagta 120  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||| |        |||| ||||||||||||||||||||    
T  19912955 ataaaagtttgtcttttttatttatattttgggataaagaaaatgtgttattttgcttatattatgggacggagggagta 19913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 39174224 - 39174181
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||| ||||||||||||||||||||||||| |||||||||||    
T  39174224 ataaaagtttgtcttttttacttatattttggaacaaagaaaat 39174181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9158073 - 9157990
Alignment:
Q  1 cttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||||||||||||||||       ||| | || ||||||||||| ||||||||||||  ||||||||||||| |||||||||    
T  9158073 cttggaaaagagattttttttaaaaacaagattaaatagaataaaagtttgtcttttttgattatattttgggataaagaaaat 9157990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 18800919 - 18800965
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||    
T  18800919 ataaaagtatgtcttttttgcttatattttgggacaaagaaaatgag 18800965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 28843655 - 28843701
Alignment:
Q  40 aataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||    
T  28843655 aataaaaatttatcctttttacttatattttgggataaagaaaatga 28843701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 35069047 - 35069096
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||| |||||| |||||| |||||||||||||||||||||||| ||||||    
T  35069047 ataggataaaagtttgtcatttttacttatattttgggacaaaaaaaatg 35069096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 14805844 - 14805800
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||    
T  14805844 ataaaagtttgtctgttttgcttatattttgggacaaagaaaatg 14805800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 15252838 - 15252794
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||    
T  15252838 ataaaagtttgtctgttttgcttatattttgggacaaagaaaatg 15252794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 21761939 - 21761983
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||    
T  21761939 aaaaatttgtcttttttacttataatttgagacaaaaaaaatgag 21761983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 38260275 - 38260231
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||    
T  38260275 aaaagtttgtattttttacttataatttgggacaaagaaaatgag 38260231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 45485927 - 45485883
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||| ||||||||||||||    
T  45485927 ataaaattttgtcttttttgcttatatttttggacaaagaaaatg 45485883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4910810 - 4910894
Alignment:
Q  1 cttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||||||||||||||||       ||| | || ||| ||||||| |||||  ||||| |||||||||||||||||||||||||    
T  4910810 cttggaaaagagattttttgaaaaaacaagattaaatataataaaagtttgttctttttgcttatattttgggacaaagaaaatg 4910894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 22632035 - 22631984
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| |||||| ||||| |||||||||| | ||||||||||||||    
T  22632035 atagaataaaagtttgtcctttttgcttatattttagaacaaagaaaatgag 22631984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 31280611 - 31280658
Alignment:
Q  36 atagaataaaaatttgtctttt-ttacttatattttgggacaaagaaa 82  Q
    |||| |||||||||||| |||| |||||||||||||||||||||||||    
T  31280611 ataggataaaaatttgtatttttttacttatattttgggacaaagaaa 31280658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 31550103 - 31550142
Alignment:
Q  48 tttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  31550103 tttgtcttttttacttacattttgggacaaagaaattgag 31550142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 41890411 - 41890462
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  41890411 atagcataaaaattggtcttttttgcttatattttgagacaaagaatatgag 41890462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 45598867 - 45598816
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  45598867 atagcataaaaattagtcttttttgcttatattttgagacaaagaacatgag 45598816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 15739506 - 15739457
Alignment:
Q  37 tagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||| |||||||| |||||||||| ||| ||||||||||||    
T  15739506 tagaataaaaatttatctttttt-cttatattttaggataaagaaaatgag 15739457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 37767214 - 37767256
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||    
T  37767214 aaaagtttgtcttttttacttataatttaggacaaagaaaatg 37767256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 44600404 - 44600358
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  44600404 ataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 44600358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 6190975 - 6190942
Alignment:
Q  54 ttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||||||||||||||||||    
T  6190975 tttttttcttatattttgggacaaagaaaatgag 6190942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 25737813 - 25737857
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||| | |||||| |||||||||||||||||||||||||    
T  25737813 ataaaagttttttttttttgcttatattttgggacaaagaaaatg 25737857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 35923226 - 35923182
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||    
T  35923226 ataaaagtttatctttttttattatattttgggacaaagaaaatg 35923182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35525579 - 35525493
Alignment:
Q  1 cttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||       ||| | || |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  35525579 cttggaaaagagattttttagaaaaacaagattaaataggataaaagtttgtcttttttacttatattttgggacaaagaaaatgag 35525493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 4047108 - 4047159
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  4047108 atagaataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 4047159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 30576041 - 30576089
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  30576041 ataggataaaaatttgtcttttttgcttatattttgggacaaagaaaat 30576089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 24510883 - 24510929
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  24510883 ataaaaattggtctttttaacttatattttgggacaaagaaaatgag 24510929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 34890393 - 34890439
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  34890393 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatgag 34890439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 7022591 - 7022635
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  7022591 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 7022635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 7858500 - 7858456
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  7858500 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 7858456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 8107837 - 8107884
Alignment:
Q  41 ataaaaatttgtctttttta-cttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||    
T  8107837 ataaaaatttgtctttttttgcttatattttgggacaaagaaaatgag 8107884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 13144175 - 13144226
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| ||||||||||| |||||||||||||||    
T  13144175 ataggataaaagtttgtcttttttgcttatattttgagacaaagaaaatgag 13144226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 24892784 - 24892733
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| |||||||||||| ||||||||||||||    
T  24892784 ataggataaaagtttgtcttttttgcttatattttggaacaaagaaaatgag 24892733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 36190717 - 36190666
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| | |||||||||| |||||||||||||||||||||||||||    
T  36190717 ataggataaaagtgtgtcttttttgcttatattttgggacaaagaaaatgag 36190666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 36538025 - 36537974
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| |||||||||||| ||||||||||| |||||||||||||||    
T  36538025 atagcataaaagtttgtcttttttgcttatattttgagacaaagaaaatgag 36537974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 7971070 - 7971016
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||| || |||||||    
T  7971070 catggtgctgatgcaatccggattacgtaatccggacagcaccagcatcaattct 7971016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 13143705 - 13143659
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||||    
T  13143705 ataaaagtttatcttttttgcttatattttgggacaaagaaaatgag 13143659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 17713183 - 17713137
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||    
T  17713183 ataaaagttggtcttttttacttataatttgggacaaagaaaatgag 17713137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 24627655 - 24627709
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  24627655 catggtgctgatgcaatccggattacgtaatccggacaacaccagcaccaattct 24627709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 8711817 - 8711772
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||    
T  8711817 ataaaaatttgtcttttttatttatattttgagacaaataaaatga 8711772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 15958105 - 15958146
Alignment:
Q  43 aaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  15958105 aaaaatttgtattttttgcttatattttgggacaaagaaaat 15958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 7499671 - 7499623
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||||| || ||||||||||||||||||||||||||| |||| ||||    
T  7499671 atagaatacaagtttgtcttttttacttatattttgggataaaggaaat 7499623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 26954592 - 26954636
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| || |||||||||||||||| ||||||||||||||||||    
T  26954592 ataaaatttggtcttttttacttataatttgggacaaagaaaatg 26954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 28348591 - 28348511
Alignment:
Q  2 ttggaaaagagattttttnnnnnnncaataatacatagaataaaaatttgtcttttttacttatattttgggacaaagaaaa 83  Q
    ||||||||||||||||||       ||| | || |||| |||||| |||||||||||| |||||||||||||||||||||||    
T  28348591 ttggaaaagagatttttttagaaaacaagattaaataggataaaagtttgtctttttt-cttatattttgggacaaagaaaa 28348511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 41530756 - 41530808
Alignment:
Q  280 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaatt 332  Q
    ||||||| || |||||||| ||||||||||||| |||| ||||||||||||||    
T  41530756 catggtgctgttgcaatccggattacgtaatccggacatcaccatcaccaatt 41530808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 41809017 - 41809065
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    ||||||||||| |||||||||||| ||||||||||| |||||| |||||    
T  41809017 atagaataaaagtttgtcttttttgcttatattttgagacaaaaaaaat 41809065  T

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Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 11044024 - 11043973
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  11044024 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 11043973  T

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Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 16635406 - 16635355
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || |||||| ||||||||||||| ||||||||||||||||    
T  16635406 atagcataaaagttggtctttcttacttatattttaggacaaagaaaatgag 16635355  T

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Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 16635542 - 16635491
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || |||||| ||||||||||||| ||||||||||||||||    
T  16635542 atagcataaaagttggtctttcttacttatattttaggacaaagaaaatgag 16635491  T

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Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 24612674 - 24612725
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  24612674 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaatgag 24612725  T

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Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 35344333 - 35344282
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  35344333 atagcataaaaattggtcttttttgcttatattttgagacaaagaatatgag 35344282  T

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Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 29920485 - 29920535
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| ||||| |||||| ||||||||| ||||||||||||||||    
T  29920485 ataggataaaagtttgtgttttttgcttatatttagggacaaagaaaatga 29920535  T

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Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 41086574 - 41086619
Alignment:
Q  41 ataaaaatttgtctttttta-cttatattttgggacaaagaaaatg 85  Q
    |||||| ||||||||||||  |||||||||||||||||||||||||    
T  41086574 ataaaagtttgtctttttttgcttatattttgggacaaagaaaatg 41086619  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 2238791 - 2238827
Alignment:
Q  51 gtcttttttacttatattttgggacaaagaaaatgag 87  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  2238791 gtcttttttgcttatattttaggacaaagaaaatgag 2238827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 8673342 - 8673298
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| || ||||||||| |||||| ||||||||||||||||||    
T  8673342 ataaaagttggtcttttttgcttataatttgggacaaagaaaatg 8673298  T

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Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 20051549 - 20051506
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||    
T  20051549 ataaaaatttgtcgttttt-cttatattttggtacaaagaaaatg 20051506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 25321780 - 25321828
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||| |||||| || ||||||||| ||||||||||| ||||||||||||    
T  25321780 atagcataaaagttggtcttttttgcttatattttgagacaaagaaaat 25321828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 43216587 - 43216619
Alignment:
Q  54 ttttttacttatattttgggacaaagaaaatga 86  Q
    |||||| ||||||||||||||||||||||||||    
T  43216587 ttttttgcttatattttgggacaaagaaaatga 43216619  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 157742 - 157694
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  157742 atagaataaaagtttgtcttttttgcttatattttgggacaaagaaaat 157694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 960 - 910
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  960 ataggataaaagtttgtcttttttgcttatattttgggacaaagaaaatga 910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 8920 - 8870
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaatga 86  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  8920 ataggataaaagtttgtcttttttgcttatattttgggacaaagaaaatga 8870  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 205883 - 205830
Alignment:
Q  281 atggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 334  Q
    |||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||    
T  205883 atggtgttaatgcaatccggattacgtaatccagacatcaccagcaccaattct 205830  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 77931 - 77887
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  77931 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 77887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 3095908 - 3095952
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  3095908 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 3095952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 21542392 - 21542348
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  21542392 ataaaagtttgtcttttttgcttatattttgggacaaagaaaatg 21542348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 34177828 - 34177872
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||    
T  34177828 ataaaagtttgtgttttttacttatattttggtacaaagaaaatg 34177872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 35129242 - 35129286
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||    
T  35129242 ataaaagtttgtcttttttgcttgtattttgggacaaagaaaatg 35129286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 1576870 - 1576919
Alignment:
Q  37 tagaataaaaatttgtcttttttacttatattttgggacaaagaaaatgag 87  Q
    |||||||||||||| |||||||| |||||||||| ||| ||||||||||||    
T  1576870 tagaataaaaatttatctttttt-cttatattttaggataaagaaaatgag 1576919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 2851525 - 2851479
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaa 82  Q
    |||| |||||||||||||||||| | ||||| |||||||||||||||    
T  2851525 ataggataaaaatttgtctttttcatttataatttgggacaaagaaa 2851479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 30949099 - 30949051
Alignment:
Q  36 atagaataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||| |||||| || ||||||||| ||||||||||| ||||||||||||    
T  30949099 atagcataaaagttagtcttttttgcttatattttgagacaaagaaaat 30949051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 10019 - 9979
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaa 81  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  10019 ataaaagtttgccttttttacttatattttgggacaaagaa 9979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 154835 - 154792
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaat 84  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||    
T  154835 ataaaagtttatcttttttacttatattttgagacaaagaaaat 154792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 3615 - 3655
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaa 81  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  3615 ataaaagtttatcttttttgcttatattttgggacaaagaa 3655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 760 - 804
Alignment:
Q  41 ataaaaatttgtcttttttacttatattttgggacaaagaaaatg 85  Q
    |||||| ||||| |||||| |||||||||||| ||||||||||||    
T  760 ataaaagtttgtgttttttgcttatattttggtacaaagaaaatg 804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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