View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_12 (Length: 391)
Name: NF1841_low_12
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 121 - 342
Target Start/End: Complemental strand, 40397600 - 40397379
Alignment:
| Q |
121 |
agaacctgtgtatacggaagacgccaaatgcatatgacaaataaatccaatatacatgttggaatacgaaaaataaagccctagatatgacttgaaagtt |
220 |
Q |
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| T |
40397600 |
agaacctgtgtatacggaagacgccaaatgcatatgacaaataaatccaatatacatgttggaatacgaaaaataaagccctagatatgacttgaaagtt |
40397501 |
T |
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| Q |
221 |
gaatatgtttggtttggaaaagnnnnnnnnnntaatagtagaaaaatgaatatgaatttgagagctgaaagacagaaaggtgat--ttggtactaagatg |
318 |
Q |
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| T |
40397500 |
gaatatgtttggtttggaaaa--aaaaaaaaattaaagtagaaaaatgaatatgaatttgagagctgaaagacagaaaggtgattgttggtactaagagg |
40397403 |
T |
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| Q |
319 |
acaaacaactttgcaagaaaatct |
342 |
Q |
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| T |
40397402 |
acaaacaactttgcaagaaaatct |
40397379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 46824087 - 46824171
Alignment:
| Q |
25 |
caattctacttatattctgtggtgtttgacttgatatatacacattgacattggcatgctttgttcagtgtatatgctgcgaattagtgaa |
115 |
Q |
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| T |
46824087 |
caattctacttatattctgtggtgtttgacttgatatatac------acattggcatgctttgttcagtgtatatgctgcgaattattgaa |
46824171 |
T |
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