View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_13 (Length: 379)

Name: NF1841_low_13
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_13
NF1841_low_13
[»] chr6 (8 HSPs)
chr6 (111-363)||(11176497-11176742)
chr6 (120-227)||(15455510-15455617)
chr6 (221-274)||(9870275-9870328)
chr6 (303-363)||(22570813-22570870)
chr6 (17-46)||(11176398-11176427)
chr6 (221-270)||(21844719-21844768)
chr6 (304-352)||(21844800-21844849)
chr6 (319-363)||(23843813-23843856)
[»] chr7 (12 HSPs)
chr7 (126-227)||(1586717-1586818)
chr7 (111-221)||(8315873-8315983)
chr7 (221-361)||(6038310-6038449)
chr7 (155-227)||(12389660-12389732)
chr7 (221-275)||(19155471-19155525)
chr7 (155-221)||(19202646-19202712)
chr7 (221-275)||(20754870-20754924)
chr7 (220-363)||(8316064-8316204)
chr7 (303-363)||(20578414-20578474)
chr7 (221-363)||(13251773-13251915)
chr7 (221-274)||(19202493-19202546)
chr7 (221-274)||(39269260-39269313)
[»] chr2 (11 HSPs)
chr2 (221-363)||(16815724-16815861)
chr2 (221-363)||(16854881-16855018)
chr2 (156-227)||(23008858-23008929)
chr2 (224-284)||(23009020-23009080)
chr2 (136-194)||(16815947-16816005)
chr2 (136-194)||(16855104-16855162)
chr2 (221-275)||(25923663-25923717)
chr2 (306-363)||(23009103-23009159)
chr2 (221-270)||(28922549-28922598)
chr2 (319-363)||(22565734-22565777)
chr2 (319-366)||(24522592-24522637)
[»] chr5 (14 HSPs)
chr5 (137-227)||(19054294-19054384)
chr5 (135-227)||(9826452-9826544)
chr5 (129-221)||(31598894-31598986)
chr5 (155-221)||(9834670-9834736)
chr5 (303-363)||(24319650-24319710)
chr5 (221-363)||(34489828-34489967)
chr5 (159-210)||(31213697-31213748)
chr5 (221-284)||(31599083-31599146)
chr5 (221-275)||(20547433-20547487)
chr5 (136-189)||(25405210-25405263)
chr5 (178-227)||(24319424-24319473)
chr5 (221-272)||(25571452-25571503)
chr5 (320-363)||(24263030-24263071)
chr5 (127-227)||(24263247-24263347)
[»] chr8 (9 HSPs)
chr8 (130-221)||(21320735-21320826)
chr8 (221-362)||(18571463-18571601)
chr8 (221-275)||(17099200-17099254)
chr8 (303-363)||(17964089-17964150)
chr8 (319-363)||(24721433-24721478)
chr8 (157-210)||(25231858-25231911)
chr8 (305-361)||(29761924-29761979)
chr8 (221-274)||(21320587-21320640)
chr8 (221-274)||(24721341-24721394)
[»] chr1 (2 HSPs)
chr1 (137-208)||(18828568-18828639)
chr1 (319-363)||(18828322-18828365)
[»] chr4 (8 HSPs)
chr4 (137-227)||(12609104-12609194)
chr4 (222-274)||(13130864-13130916)
chr4 (142-227)||(17110151-17110236)
chr4 (221-274)||(17110021-17110074)
chr4 (155-221)||(13130702-13130768)
chr4 (303-363)||(9054968-9055026)
chr4 (221-269)||(12608968-12609016)
chr4 (319-363)||(17109671-17109714)
[»] chr3 (10 HSPs)
chr3 (303-363)||(8146766-8146826)
chr3 (129-221)||(17142524-17142616)
chr3 (139-227)||(19166117-19166204)
chr3 (129-227)||(16227203-16227301)
chr3 (304-363)||(34275578-34275636)
chr3 (303-363)||(13586520-13586581)
chr3 (304-355)||(8766619-8766671)
chr3 (304-355)||(8771502-8771554)
chr3 (221-270)||(17142381-17142430)
chr3 (305-362)||(19913515-19913571)
[»] scaffold0072 (1 HSPs)
scaffold0072 (136-200)||(39384-39448)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 111 - 363
Target Start/End: Original strand, 11176497 - 11176742
Alignment:
Q  111 ggaagtcacttcaaattgtttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatca 210  Q
    ||||||||||||||| |||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11176497 ggaagtcacttcaaagtgttcacagtggaggctagtttacttca-------agagcacaatactttttggggcttgctactgaaggtacttataggatca 11176589  T
Q  211 acatctcttttatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggta 310  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||       ||||||||    
T  11176590 acatctcttttctgaatgctattttttctcgaatttgctgtcgttctttacggacgatcagttaaaatataataaacataagacatttttttctttggta 11176689  T
Q  311 ccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11176690 ccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 11176742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 15455617 - 15455510
Alignment:
Q  120 ttcaaattgtttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctt 219  Q
    |||||| ||||||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  15455617 ttcaaagtgtttacagtggaggctagtttacccttacattcaagagcacgatactttttggggcttgctactgaaggtgcttataggatcatcatctctt 15455518  T
Q  220 ttatgaat 227  Q
    || |||||    
T  15455517 ttttgaat 15455510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 9870275 - 9870328
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggtta 274  Q
    |||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  9870275 tatgaatgctatttttgctcgaatttgcgtccgttctttacagacgatcggtta 9870328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 22570870 - 22570813
Alignment:
Q  303 ctttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||||||||||||  |||| ||||||||||||   ||||||||||||||||| |||||||    
T  22570870 ctttggtaccttgagccttttaagccacccttt---tattcttattatcctttgtgaaacc 22570813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 11176398 - 11176427
Alignment:
Q  17 aatacttaagttttatcttataaaattgta 46  Q
    ||||||||||||||||||||||||||||||    
T  11176398 aatacttaagttttatcttataaaattgta 11176427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 21844719 - 21844768
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcg 270  Q
    |||||||||||||||| || ||||||   |||||||||||||||||||||    
T  21844719 tatgaatgctatttttgcttgaatttatggccgttctttacggacgatcg 21844768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 21844800 - 21844849
Alignment:
Q  304 tttggtaccttgatactttcaagccacccttttt-atattcttattatcc 352  Q
    ||||||| |||||  ||||||||||||||||||| |||||||||||||||    
T  21844800 tttggtatcttgagcctttcaagccaccctttttaatattcttattatcc 21844849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 23843813 - 23843856
Alignment:
Q  319 ctttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||||||||||||| || |||||||||||||||||| |||||||    
T  23843813 ctttcaagccaccctatt-atattcttattatcctttgtgaaacc 23843856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 1586818 - 1586717
Alignment:
Q  126 ttgtttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatga 225  Q
    ||||||||| ||||||||||||||| |   ||||||||||||| |||||||  ||||||||||||||||||||||| |||||||| |||||||||| |||    
T  1586818 ttgtttacattggaggctagtttacctttgcattcaagagcacgatactttcaggggcttgctactgaaggtacttgtaggatcaccatctcttttctga 1586719  T
Q  226 at 227  Q
    ||    
T  1586718 at 1586717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 8315873 - 8315983
Alignment:
Q  111 ggaagtcacttcaaattgtttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatca 210  Q
    |||||||| ||||||   ||||||||||||||||||||||    ||||||||||| || ||||||| | |||||||||||||||||||||||||||||||    
T  8315873 ggaagtcatttcaaagcatttacagtggaggctagtttacccttacattcaagagaacgatactttctagggcttgctactgaaggtacttataggatca 8315972  T
Q  211 acatctctttt 221  Q
     | ||||||||    
T  8315973 ccgtctctttt 8315983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 6038310 - 6038449
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggtaccttgatact 320  Q
    |||| ||| ||||||| ||||||||||  || |||||||||||||||||||||||  |||| || |||| |||||        ||||||||||| |  ||    
T  6038310 tatggatgttatttttgctcgaatttgtggctgttctttacggacgatcggttaagttatattacacatgagacaattttttatttggtaccttcagcct 6038409  T
Q  321 ttcaagccaccctttttatattcttattatcctttttgaaa 361  Q
    |||||||||||| ||||||||| |||||||||||| |||||    
T  6038410 ttcaagccaccc-ttttatatttttattatcctttgtgaaa 6038449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 12389732 - 12389660
Alignment:
Q  155 acattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    |||||||||||||| ||||||| ||||| |||||| |||| ||||||||||||||| || ||||||| |||||    
T  12389732 acattcaagagcacgatactttatggggattgctagtgaaagtacttataggatcaccaactcttttctgaat 12389660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 19155471 - 19155525
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaa 275  Q
    |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||    
T  19155471 tatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaa 19155525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 19202712 - 19202646
Alignment:
Q  155 acattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt 221  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| | | ||||||||    
T  19202712 acattcaagagcacgatactttatggggcttgctagtgaaggtacttatatgataaccttctctttt 19202646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 20754870 - 20754924
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaa 275  Q
    |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||    
T  20754870 tatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaa 20754924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 363
Target Start/End: Original strand, 8316064 - 8316204
Alignment:
Q  220 ttatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggtaccttgatac 319  Q
    ||||||||| ||||||| ||||||||| | | |||||||||||||| |||||| | | ||||||| |||  || ||       ||||||||||||||  |    
T  8316064 ttatgaatgttatttttgctcgaatttacggtcgttctttacggacaatcggtaatattataatacacacgaggcattttt--ctttggtaccttgagtc 8316161  T
Q  320 tttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||||| |||||| ||||||||||| |||||||||| |||||||    
T  8316162 tttcaaaccaccc-ttttatattctcattatcctttgtgaaacc 8316204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 20578474 - 20578414
Alignment:
Q  303 ctttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||||||||||||  ||||||||||||| | |||||||||||||||| |||| |||||||    
T  20578474 ctttggtaccttgagcctttcaagccaccatgtttatattcttattatactttgtgaaacc 20578414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 363
Target Start/End: Original strand, 13251773 - 13251915
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggtaccttgatact 320  Q
    |||||||||||||||| || |||||||| | ||||||||||||||||| | |||   |||| || |||  |||||       |||||| |||||||  ||    
T  13251773 tatgaatgctatttttgcttgaatttgcggtcgttctttacggacgattgattaggttatattacacacgagaca-atttttctttggcaccttgagcct 13251871  T
Q  321 ttcaagccacccttt-ttatattcttattatcctttttgaaacc 363  Q
    || || ||||||||| |||||||||||||||||||| |||||||    
T  13251872 tttaatccaccctttattatattcttattatcctttgtgaaacc 13251915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 19202546 - 19202493
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggtta 274  Q
    |||||||||||||||| || |||||||| ||||||||||||| |||||| ||||    
T  19202546 tatgaatgctatttttgcttgaatttgcggccgttctttacgaacgatcagtta 19202493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 39269260 - 39269313
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggtta 274  Q
    ||||||| |||||||| || |||||||| || |||||||||||| |||||||||    
T  39269260 tatgaatactatttttgcttgaatttgcagctgttctttacggatgatcggtta 39269313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 363
Target Start/End: Complemental strand, 16815861 - 16815724
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggtaccttgatact 320  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| ||||  ||||       ||||||||||||||  ||    
T  16815861 tatgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacat--gaca--cttttctttggtaccttgagcct 16815766  T
Q  321 ttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||||||||||| |||||||||| ||||||||||| |||||||    
T  16815765 ttcaagccaccc-ttttatattcatattatcctttgtgaaacc 16815724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 363
Target Start/End: Complemental strand, 16855018 - 16854881
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggtaccttgatact 320  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| ||||  ||||       ||||||||||||||  ||    
T  16855018 tatgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacat--gaca--cttttctttggtaccttgagcct 16854923  T
Q  321 ttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||||||||||| |||||||||| ||||||||||| |||||||    
T  16854922 ttcaagccaccc-ttttatattcatattatcctttgtgaaacc 16854881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 23008858 - 23008929
Alignment:
Q  156 cattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  23008858 cattcaagaacacgatactttatggggcttgctactgaaggtacttataggatcactatctcttttatgaat 23008929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 23009020 - 23009080
Alignment:
Q  224 gaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataata 284  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  23009020 gaatgctatttttgctcgaatttgcggccgttttttacggacgatcggttaaattataata 23009080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 16816005 - 16815947
Alignment:
Q  136 tggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaa 194  Q
    |||||||||||||||    |||||||||||||| ||||||| || ||||||||||||||    
T  16816005 tggaggctagtttacccttacattcaagagcacgatactttctgaggcttgctactgaa 16815947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 16855162 - 16855104
Alignment:
Q  136 tggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaa 194  Q
    |||||||||||||||    |||||||||||||| ||||||| || ||||||||||||||    
T  16855162 tggaggctagtttacccttacattcaagagcacgatactttctgaggcttgctactgaa 16855104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 25923717 - 25923663
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaa 275  Q
    |||||||| ||||||| || |||||| | |||||||||||| |||||||||||||    
T  25923717 tatgaatgttatttttgcttgaattttcggccgttctttactgacgatcggttaa 25923663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 23009103 - 23009159
Alignment:
Q  306 tggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||||||||||  ||||||||||||  |||| |||||||||||||||||| |||||||    
T  23009103 tggtaccttgagcctttcaagccacaatttt-atattcttattatcctttgtgaaacc 23009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 28922598 - 28922549
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcg 270  Q
    |||||||||||||||| || |||||| | | |||||||||||||||||||    
T  28922598 tatgaatgctatttttgcttgaatttacggtcgttctttacggacgatcg 28922549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 22565734 - 22565777
Alignment:
Q  319 ctttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||    
T  22565734 ctttcaagccaccctttt-atattcttatcatcctttgtgaaacc 22565777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 24522637 - 24522592
Alignment:
Q  319 ctttcaagccaccctttttatattcttattatcctttttgaaacctct 366  Q
    |||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  24522637 cttttaagccacccttt--atattcttattatcctttgtgaaacctct 24522592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 19054384 - 19054294
Alignment:
Q  137 ggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    ||||||||||||||    |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||    
T  19054384 ggaggctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtacttataggatcaccatctcttttctgaat 19054294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 9826544 - 9826452
Alignment:
Q  135 gtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    ||||||||||||||||    |||||||||||||| ||||||| ||||||||| || |||||||||||||||||||| || ||||||| |||||    
T  9826544 gtggaggctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactcttttttgaat 9826452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 31598894 - 31598986
Alignment:
Q  129 tttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt 221  Q
    ||||| ||||| ||||||||||    ||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||    
T  31598894 tttacggtggatgctagtttacccttacatttaagagcacgatactttctggggcttgctactgatggtacttataggatcaccatctctttt 31598986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 9834736 - 9834670
Alignment:
Q  155 acattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt 221  Q
    |||||||||||||| ||||||| ||||||||| || |||||||||||||||||||| || |||||||    
T  9834736 acattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttt 9834670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 24319650 - 24319710
Alignment:
Q  303 ctttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||    
T  24319650 ctttagtaccttgatcctttcaacccaccctttttatattcttattatgctttgtgaaacc 24319710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 363
Target Start/End: Complemental strand, 34489967 - 34489828
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggtaccttgatact 320  Q
    |||||||||||| |||   ||||||||| || |||||||||||||||||| ||||  ||||||| |||  || ||       ||||||||||||||  ||    
T  34489967 tatgaatgctatctttgtccgaatttgcggcagttctttacggacgatcgattaagttataatacacacgaggcattttt--ctttggtaccttgagcct 34489870  T
Q  321 ttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    || ||||||||||||| |||||||||||||| |||||||||||    
T  34489869 tttaagccaccctttt-atattcttattatcatttttgaaacc 34489828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 31213748 - 31213697
Alignment:
Q  159 tcaagagcacaatactttttggggcttgctactgaaggtacttataggatca 210  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  31213748 tcaagagcataatactttatggggcttgctacttaaggtacttataggatca 31213697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 31599083 - 31599146
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataata 284  Q
    |||||||| ||||||| ||||||||||| |||||||||||| |||||||||||| | |||||||    
T  31599083 tatgaatgttatttttgctcgaatttgcggccgttctttacagacgatcggttagattataata 31599146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 20547433 - 20547487
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaa 275  Q
    |||||||| ||||||| || |||||||| ||||||||||||||||||||||||||    
T  20547433 tatgaatgttatttttgcttgaatttgcggccgttctttacggacgatcggttaa 20547487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 25405210 - 25405263
Alignment:
Q  136 tggaggctagtttacttcaacattcaagagcacaatactttttggggcttgcta 189  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||||||    
T  25405210 tggaggctagtttacccctacattcaagagcacgatactttttggggcttgcta 25405263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 24319424 - 24319473
Alignment:
Q  178 tggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    |||||||||||| | ||||||||||||||||||||| ||||||| |||||    
T  24319424 tggggcttgctagtaaaggtacttataggatcaacaactcttttctgaat 24319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 25571452 - 25571503
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggt 272  Q
    |||||||| ||||||| ||||||||| ||| ||||||||| |||||||||||    
T  25571452 tatgaatgttatttttgctcgaattttctgtcgttctttaaggacgatcggt 25571503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 363
Target Start/End: Complemental strand, 24263071 - 24263030
Alignment:
Q  320 tttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||||||||||||||  |||||||||||||||||| |||||||    
T  24263071 tttcaagccacccttt--atattcttattatcctttgtgaaacc 24263030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 24263347 - 24263247
Alignment:
Q  127 tgtttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaa 226  Q
    |||||||| ||||||||| |||||    ||||| |||||||| |||  | |||| | || |||||||||||||| ||| ||||| |||||||||| ||||    
T  24263347 tgtttacattggaggctaatttacccttacatttaagagcacgataactattggaggttactactgaaggtactcatatgatcaccatctcttttctgaa 24263248  T
Q  227 t 227  Q
    |    
T  24263247 t 24263247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 21320826 - 21320735
Alignment:
Q  130 ttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt 221  Q
    |||||||||||||||||||||  | ||||||||||||||  |||||| |||||||||||| | |||||  ||||||||||| ||| ||||||    
T  21320826 ttacagtggaggctagtttacccctacattcaagagcacggtactttctggggcttgctagttaaggtttttataggatcaccatatctttt 21320735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 362
Target Start/End: Complemental strand, 18571601 - 18571463
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaaaatataataaacataagacannnnnnnctttggtaccttgatact 320  Q
    |||||| |||||||||||| |||||||| || |||||||| ||||||||| |||   |||| || |||| || ||       ||||||||||| ||  ||    
T  18571601 tatgaacgctattttttcttgaatttgcggctgttctttatggacgatcgattaggttatattacacatgaggcaatttt--ctttggtacctagagcct 18571504  T
Q  321 ttcaagccaccctttttatattcttattatcctttttgaaac 362  Q
    ||||||||||||| || |||||||||||||||||| ||||||    
T  18571503 ttcaagccaccctgtt-atattcttattatcctttgtgaaac 18571463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 17099200 - 17099254
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggttaa 275  Q
    |||||||||||||||| || |||||||  ||||||||||| ||||||||||||||    
T  17099200 tatgaatgctatttttgcttgaatttgtggccgttctttatggacgatcggttaa 17099254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 17964150 - 17964089
Alignment:
Q  303 ctttggtaccttgatactttcaagccaccctttt-tatattcttattatcctttttgaaacc 363  Q
    ||||||||||||||  ||||||||||| |||||| |||||| |||||||||||| |||||||    
T  17964150 ctttggtaccttgagcctttcaagccatccttttatatatttttattatcctttatgaaacc 17964089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 24721433 - 24721478
Alignment:
Q  319 ctttcaagccacccttttta-tattcttattatcctttttgaaacc 363  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||    
T  24721433 ctttcaagccaccctttttaatattcttattatcctttgtgaaacc 24721478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 25231911 - 25231858
Alignment:
Q  157 attcaagagcacaatactttttggggcttgctactgaaggtacttataggatca 210  Q
    |||||||||||||||||||| |||  ||| ||| ||||||||||||||||||||    
T  25231911 attcaagagcacaatactttatggaactttctagtgaaggtacttataggatca 25231858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 29761924 - 29761979
Alignment:
Q  305 ttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaa 361  Q
    ||||||||||||  |||||||||||||| ||||||||||||||| |||||| |||||    
T  29761924 ttggtaccttgagcctttcaagccaccc-ttttatattcttattttcctttgtgaaa 29761979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 21320640 - 21320587
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggtta 274  Q
    |||||||||||||||| || |||||||  | ||||||||||||| |||||||||    
T  21320640 tatgaatgctatttttgcttgaatttgaggtcgttctttacggatgatcggtta 21320587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 24721341 - 24721394
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggtta 274  Q
    ||||||||||| |||| || ||||| ||  ||||||||||||||||||||||||    
T  24721341 tatgaatgctacttttgcttgaattagcgaccgttctttacggacgatcggtta 24721394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 18828639 - 18828568
Alignment:
Q  137 ggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggat 208  Q
    |||| ||||||||||   |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  18828639 ggagcctagtttactcttacattcaagagcacaagactttttggggcttgctagtgaaggtacttatgggat 18828568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 18828365 - 18828322
Alignment:
Q  319 ctttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||||||||||||| || |||||||||||||||||| |||||||    
T  18828365 ctttcaagccaccctgtt-atattcttattatcctttgtgaaacc 18828322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 12609194 - 12609104
Alignment:
Q  137 ggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    ||||||||||||||    |||||||||||||| ||||||| |||||||| | | |||||||||||||| ||||| |||||||||| |||||    
T  12609194 ggaggctagtttacccttacattcaagagcacgatactttctggggcttaccagtgaaggtacttataagatcaccatctcttttctgaat 12609104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 13130864 - 13130916
Alignment:
Q  222 atgaatgctattttttctcgaatttgctgccgttctttacggacgatcggtta 274  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  13130864 atgaatgctatttttgcttgaatttgcggccgttctttacggacgatcggtta 13130916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 17110236 - 17110151
Alignment:
Q  142 ctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    ||||||||||   ||||||||||| || |||||||||||||||| ||| |||| ||||| ||| ||||| |||||||||| |||||    
T  17110236 ctagtttactcttacattcaagagtacgatactttttggggctttctagtgaaagtactgatatgatcaccatctcttttttgaat 17110151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 17110074 - 17110021
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcggtta 274  Q
    |||||||||||||||| || ||||||| || ||||||||||||| |||||||||    
T  17110074 tatgaatgctatttttgcttgaatttgttgtcgttctttacggatgatcggtta 17110021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 13130702 - 13130768
Alignment:
Q  155 acattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt 221  Q
    |||||||||||||  ||||||| || ||||||||  |||||||||||| | ||||| ||||||||||    
T  13130702 acattcaagagcatgatactttatgcggcttgctcgtgaaggtacttaaaagatcaccatctctttt 13130768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 9055026 - 9054968
Alignment:
Q  303 ctttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||||||| ||||  |||||||||||||  |||||||||||| ||||||||| |||||||    
T  9055026 ctttggtacattgagcctttcaagccacc--ttttatattcttgttatcctttgtgaaacc 9054968  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 12609016 - 12608968
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatc 269  Q
    |||||||||||||||| || ||||||||  | |||||||||||||||||    
T  12609016 tatgaatgctatttttgcttgaatttgcgacagttctttacggacgatc 12608968  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 17109714 - 17109671
Alignment:
Q  319 ctttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||||||||||||| || |||||||||||||||||| |||||||    
T  17109714 ctttcaagccaccctgtt-atattcttattatcctttgtgaaacc 17109671  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 8146826 - 8146766
Alignment:
Q  303 ctttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||| |||| |||||||    
T  8146826 ctttggtaacttgagcctttcaagccaccctttttatattcttattattctttgtgaaacc 8146766  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 17142616 - 17142524
Alignment:
Q  129 tttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctctttt 221  Q
    ||||||||||||||||||||||    |||||||||||||| ||| ||| |||| || |||||| |||||||||||| ||||| ||||| ||||    
T  17142616 tttacagtggaggctagtttacccttacattcaagagcacgatagtttatgggactggctactaaaggtacttataagatcaccatctttttt 17142524  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 19166117 - 19166204
Alignment:
Q  139 aggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    |||||||||||| |  |||||||||||  | |||||||| ||||||||||  |||||||||||||||||||  ||||||||||||||||    
T  19166117 aggctagtttacctttacattcaagagtgcgatactttt-ggggcttgctcgtgaaggtacttataggatcgccatctcttttatgaat 19166204  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 16227301 - 16227203
Alignment:
Q  129 tttacagtggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttatgaat 227  Q
    ||||| ||| ||||||||||||    |||||||||||||  ||||||||||  |||||||  ||||||||||||||||| || |||||||||| |||||    
T  16227301 tttacggtgaaggctagtttacccttacattcaagagcatgatactttttgaagcttgcttgtgaaggtacttataggaccaccatctcttttctgaat 16227203  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 34275578 - 34275636
Alignment:
Q  304 tttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaacc 363  Q
    ||||| |||||||  |||||||||||||||||| |||||||||||||||||| |||||||    
T  34275578 tttgggaccttgaacctttcaagccaccctttt-atattcttattatcctttgtgaaacc 34275636  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 13586581 - 13586520
Alignment:
Q  303 ctttggtaccttgatactttcaagccacccttttt-atattcttattatcctttttgaaacc 363  Q
    ||||||||||||||  |||||| | |||||||||| |||||||||||||||||| |||||||    
T  13586581 ctttggtaccttgagcctttcatgacacccttttttatattcttattatcctttgtgaaacc 13586520  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 8766671 - 8766619
Alignment:
Q  304 tttggtaccttgatactttcaagccacccttttt-atattcttattatccttt 355  Q
    |||||||||||||  ||||||||||| ||||||| ||||||||||||||||||    
T  8766671 tttggtaccttgagcctttcaagccatcctttttaatattcttattatccttt 8766619  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 8771554 - 8771502
Alignment:
Q  304 tttggtaccttgatactttcaagccacccttttt-atattcttattatccttt 355  Q
    |||||||||||||  ||||||||||| ||||||| ||||||||||||||||||    
T  8771554 tttggtaccttgagcctttcaagccatcctttttaatattcttattatccttt 8771502  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 17142430 - 17142381
Alignment:
Q  221 tatgaatgctattttttctcgaatttgctgccgttctttacggacgatcg 270  Q
    |||||||||||||||| ||||||||||  | | |||||||||||||||||    
T  17142430 tatgaatgctatttttgctcgaatttgtggtcattctttacggacgatcg 17142381  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 19913571 - 19913515
Alignment:
Q  305 ttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaac 362  Q
    ||||||||||||  |||||||||||||| |||||||| || |||||||||| ||||||    
T  19913571 ttggtaccttgagcctttcaagccaccc-ttttatatcctgattatcctttgtgaaac 19913515  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 39448 - 39384
Alignment:
Q  136 tggaggctagtttacttcaacattcaagagcacaatactttttggggcttgctactgaaggtact 200  Q
    ||||||||||||||||   |||||||| | ||  |||  ||||||||||||||||||||||||||    
T  39448 tggaggctagtttactcttacattcaacaacaggataacttttggggcttgctactgaaggtact 39384  T

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