View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_14 (Length: 377)
Name: NF1841_low_14
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 12236228 - 12235912
Alignment:
| Q |
23 |
aaccgatcacttggaagttgaagagctttttt-gtacacgtcgactcattcatataggaattgagataaatgatttgccttaaagtaaatcaccaagtaa |
121 |
Q |
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| T |
12236228 |
aaccgatcacttggaagttgaagggctttttttgtacacgtcgactcattcatataggaattgagataaataatttgccttaaagtaaatcacctagtaa |
12236129 |
T |
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| Q |
122 |
aggaagttaaacagttttcttcattttcccacaaaaataggagtaatggaagttatcattatatataggtcttggaagttccccagactatactggcaag |
221 |
Q |
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| T |
12236128 |
aggaagttaaacagttttcttcattttcccacaaaaataggagta--------------------taggccttggaagttccccagactatactgccaag |
12236049 |
T |
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| Q |
222 |
tattgcttgctcgtgtaaccaaaacttttcatattctagcagttataagagtctctatctcaaggaatcatttcttatcacatagatatttggaaactaa |
321 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12236048 |
tattgcttgctcgtgcaaccaaaacttttcatattctagcagttataagagtctatatctcaaggaatcatttcttatcacatagatatttgg-aactaa |
12235950 |
T |
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| Q |
322 |
gttattacatgaatgcttgcatgttgtgatcctttttg |
359 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
12235949 |
gttattacatgaatgcttgcattttgtgatcctttttg |
12235912 |
T |
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