View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_15 (Length: 372)
Name: NF1841_low_15
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 51 - 353
Target Start/End: Original strand, 38137863 - 38138163
Alignment:
| Q |
51 |
ttagttatcaaattctaaacgttgcaattttattattctacttcatnnnnnnnnnnnnnnnnnattatcccttggtatgtgctcacaagccacaaccatc |
150 |
Q |
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| T |
38137863 |
ttagttatcaaattctaaacgttgcaattttattattctacttcattctctctctctctct--attatcccttggtatgtgctcacaagccacaaccatc |
38137960 |
T |
|
| Q |
151 |
atactcatagttttacattccaagaacaaagattttaccatcttatttctaggtttgattcaaaatattcatattatactgctatgttttcatggggtgt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38137961 |
atactcatagttttacattccaagaacaaagattttaccatcttatttctaggtttgattcaaaatattcatattatactgctatgttttcatggggtgt |
38138060 |
T |
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| Q |
251 |
taacaactttgaacatttgttttgttttaacaagaaatatttcattaaattgttgattttttaca-gtcacatgacacatcccaaaatcaaaaagaaagc |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||||| |||| |
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| T |
38138061 |
taacaactttgaacatttgttttgttttaacaagaaatatttcattaaatttttgattttttacaggtcacatgacacgt-ccaaaatcaaaaagtaagc |
38138159 |
T |
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| Q |
350 |
gaag |
353 |
Q |
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|||| |
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| T |
38138160 |
gaag |
38138163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 10595469 - 10595421
Alignment:
| Q |
256 |
actttgaacatttgttttgttttaacaagaaatatttcattaaattgtt |
304 |
Q |
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| T |
10595469 |
actttgaacatttgttttgtttttaccagaaatatttcattaaattgtt |
10595421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 30224648 - 30224573
Alignment:
| Q |
132 |
ctcacaagccacaaccatcatactca-tagttttacattccaagaacaaagattttaccatcttatttctaggttt |
206 |
Q |
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| T |
30224648 |
ctcacaagccacaatcatcatactcgctatttttacctttcaagaacaaagatttcaccatcttctttctcggttt |
30224573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 41799932 - 41799985
Alignment:
| Q |
258 |
tttgaacatttgttttgttttaacaagaaatatttcattaaattgttgattttt |
311 |
Q |
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||||| ||||||| ||||||| || |||||||||||||||||||||||| |||| |
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| T |
41799932 |
tttgatcatttgtcttgttttcactagaaatatttcattaaattgttgaatttt |
41799985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 3380546 - 3380601
Alignment:
| Q |
257 |
ctttgaacatttgttttgttttaacaagaaatatttcattaaattgttgatttttt |
312 |
Q |
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|||||||||||||||||||||| || |||||||||| ||||||||||||| ||||| |
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| T |
3380546 |
ctttgaacatttgttttgtttttaccagaaatattttattaaattgttgaattttt |
3380601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 2941802 - 2941867
Alignment:
| Q |
262 |
aacatttgttttgttttaacaagaaatatttcattaaattgttgattttttacagtcacatgacac |
327 |
Q |
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||||||||||||||||| || |||||||||||||||||||| || ||| |||| ||||| ||||| |
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| T |
2941802 |
aacatttgttttgtttttaccagaaatatttcattaaattgctgttttcttaccatcacaggacac |
2941867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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