View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_17 (Length: 339)

Name: NF1841_low_17
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_17
NF1841_low_17
[»] chr3 (2 HSPs)
chr3 (107-238)||(27237533-27237664)
chr3 (195-235)||(22418556-22418596)
[»] chr6 (1 HSPs)
chr6 (107-238)||(13850492-13850623)
[»] chr4 (1 HSPs)
chr4 (130-216)||(35030353-35030439)
[»] chr5 (2 HSPs)
chr5 (175-238)||(13475713-13475776)
chr5 (195-236)||(971898-971939)
[»] chr1 (2 HSPs)
chr1 (195-238)||(32940695-32940738)
chr1 (195-240)||(37187909-37187954)
[»] chr8 (1 HSPs)
chr8 (205-240)||(7351559-7351594)
[»] chr7 (2 HSPs)
chr7 (195-235)||(28998023-28998063)
chr7 (195-235)||(46458000-46458040)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 27237533 - 27237664
Alignment:
Q  107 ttgttcaaaagcgcttctcaacaagagttgaacacaggacacgcacatcattcaatagatgcataccgctcggctaaccatggaactagtgtggcaattg 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  27237533 ttgttcaaaagcgcttctcaacaagagttgaacacatgacacgcacatcattcaatagacgcataccactcggctaaccatggaactggtgtggcaattg 27237632  T
Q  207 ccacaccatgtttcatattagatccgcccatg 238  Q
    ||||||||||||||||||||||||||||||||    
T  27237633 ccacaccatgtttcatattagatccgcccatg 27237664  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 22418596 - 22418556
Alignment:
Q  195 gtgtggcaattgccacaccatgtttcatattagatccgccc 235  Q
    ||||||||| ||||||||||||||||| | |||||||||||    
T  22418596 gtgtggcaactgccacaccatgtttcacagtagatccgccc 22418556  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 13850623 - 13850492
Alignment:
Q  107 ttgttcaaaagcgcttctcaacaagagttgaacacaggacacgcacatcattcaatagatgcataccgctcggctaaccatggaactagtgtggcaattg 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||  || ||| |||||||||||||| |||| ||||||||| ||    
T  13850623 ttgttcaaaagcgcttctcaacaagagttgaacacaggtcacgcacatcattcagtagactcaaaccactcggctaaccatgaaactggtgtggcaactg 13850524  T
Q  207 ccacaccatgtttcatattagatccgcccatg 238  Q
    |||||||||||||||||||| |||||||||||    
T  13850523 ccacaccatgtttcatattaaatccgcccatg 13850492  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 35030353 - 35030439
Alignment:
Q  130 agagttgaacacaggacacgcacatcattcaatagatgcataccgctcggctaaccatggaactagtgtggcaattgccacaccatg 216  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||| ||||||||| ||||||||||||    
T  35030353 agagttgaacacaggacacacacatcattcaatagacgcataccactcggctaaccatgaaactggtgtggcaactgccacaccatg 35030439  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 13475713 - 13475776
Alignment:
Q  175 ctcggctaaccatggaactagtgtggcaattgccacaccatgtttcatattagatccgcccatg 238  Q
    |||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  13475713 ctcggctatccatggaactggtgtggcagttgccacaccatatttcatattagatccgcccatg 13475776  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 971898 - 971939
Alignment:
Q  195 gtgtggcaattgccacaccatgtttcatattagatccgccca 236  Q
    |||||||  |||||||||||||||||||||| ||||||||||    
T  971898 gtgtggcggttgccacaccatgtttcatattggatccgccca 971939  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 32940738 - 32940695
Alignment:
Q  195 gtgtggcaattgccacaccatgtttcatattagatccgcccatg 238  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  32940738 gtgtggcaactgccacaccatgtttcatattagatccgcccatg 32940695  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 37187954 - 37187909
Alignment:
Q  195 gtgtggcaattgccacaccatgtttcatattagatccgcccatggt 240  Q
    ||||||||| ||||||||||||||||| | ||||||||||| ||||    
T  37187954 gtgtggcaactgccacaccatgtttcacagtagatccgcccctggt 37187909  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 7351559 - 7351594
Alignment:
Q  205 tgccacaccatgtttcatattagatccgcccatggt 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  7351559 tgccacaccatgtttcatattagatccgcccatggt 7351594  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 28998063 - 28998023
Alignment:
Q  195 gtgtggcaattgccacaccatgtttcatattagatccgccc 235  Q
    ||||||||| ||||||||||||||||| | |||||||||||    
T  28998063 gtgtggcaactgccacaccatgtttcacagtagatccgccc 28998023  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 46458000 - 46458040
Alignment:
Q  195 gtgtggcaattgccacaccatgtttcatattagatccgccc 235  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  46458000 gtgtggcaactgccacaccatgtttcatagtagctccgccc 46458040  T

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