View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_2 (Length: 676)
Name: NF1841_low_2
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 263 - 645
Target Start/End: Complemental strand, 26185202 - 26184811
Alignment:
| Q |
263 |
tcagggtcgattttagcataaggtatagtccaaagactccaaacttttactaggtctatgnnnnnnnncatacttatgatgacaatttgtagaactttca |
362 |
Q |
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| T |
26185202 |
tcagggtcgattttagcataaggtatagtccaaagacaccaaacttttaccagatctatgaaaaaaa-catacttatgatgacaatttgtagaactttca |
26185104 |
T |
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| Q |
363 |
acacaatggtagccatcacttatttgttttagattaaaaat----------gtaataatttcactgaattattgatactagttttaaaaaagattgattc |
452 |
Q |
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| T |
26185103 |
acacaatggtagccatcacttatttgttttagattaaaaataattaaaaatgtaataatttcactgaaatattgatactagttttaaaaaagattgattc |
26185004 |
T |
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| Q |
453 |
taagttttttaataccnnnnnnnctactttttcatagacatttcatgtacattttgaatgaataaagcattgacatatataggggaatctaaatcagatg |
552 |
Q |
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| T |
26185003 |
taagttttttaataccaaaaaaattactttttcatagacatttcatgtacattttgaatgaataaagcattgacatatataggggaatctaaatcagatg |
26184904 |
T |
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| Q |
553 |
tacccctcattattggagtaggttctatcacaatcatttatttactttaactattttttcatctaaccaatcaacaatttaagatcataaaca |
645 |
Q |
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| T |
26184903 |
tacccctcattattggagtaggttctatcacaatcatttatttactttaactattttttcatctaaccaatcaacaatttaagatcataaaca |
26184811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 74 - 263
Target Start/End: Complemental strand, 26185422 - 26185232
Alignment:
| Q |
74 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
173 |
Q |
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| T |
26185422 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
26185323 |
T |
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| Q |
174 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaag-tataatttaaattggtcccattgaagcatacacgtccttatt |
263 |
Q |
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| T |
26185322 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaagttataatttaaattggtcccattgaagcatacacgtccttatt |
26185232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26185463 - 26185415
Alignment:
| Q |
1 |
ccaaattagaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
49 |
Q |
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| T |
26185463 |
ccaaattaaaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
26185415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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