View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_20 (Length: 324)

Name: NF1841_low_20
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_20
NF1841_low_20
[»] chr7 (23 HSPs)
chr7 (172-306)||(31742655-31742789)
chr7 (13-171)||(767136-767294)
chr7 (23-105)||(27917761-27917843)
chr7 (32-172)||(24874487-24874627)
chr7 (32-171)||(767875-768014)
chr7 (71-172)||(24873750-24873851)
chr7 (32-113)||(27918518-27918599)
chr7 (122-171)||(41617980-41618029)
chr7 (127-174)||(46491692-46491739)
chr7 (129-171)||(30581272-30581314)
chr7 (139-172)||(34809005-34809038)
chr7 (127-172)||(41358975-41359020)
chr7 (122-171)||(41965776-41965825)
chr7 (135-171)||(17114145-17114181)
chr7 (127-171)||(41617192-41617236)
chr7 (127-171)||(42818557-42818601)
chr7 (133-180)||(3314946-3314993)
chr7 (135-174)||(41965109-41965148)
chr7 (127-172)||(28007156-28007201)
chr7 (133-166)||(36611556-36611589)
chr7 (127-171)||(36611498-36611542)
chr7 (133-169)||(44876944-44876980)
chr7 (132-172)||(46491009-46491049)
[»] chr3 (24 HSPs)
chr3 (13-171)||(14746792-14746949)
chr3 (13-109)||(35982557-35982653)
chr3 (23-171)||(43453439-43453587)
chr3 (32-171)||(14746041-14746180)
chr3 (32-171)||(42020795-42020934)
chr3 (71-113)||(41418818-41418860)
chr3 (64-172)||(16076209-16076317)
chr3 (133-171)||(20807937-20807975)
chr3 (133-170)||(54308454-54308491)
chr3 (127-171)||(15287567-15287611)
chr3 (128-172)||(53346501-53346545)
chr3 (128-172)||(54753576-54753620)
chr3 (127-170)||(9830573-9830616)
chr3 (124-171)||(47571196-47571243)
chr3 (124-171)||(49349676-49349723)
chr3 (136-171)||(49350283-49350318)
chr3 (133-171)||(4706966-4707004)
chr3 (133-171)||(20808617-20808655)
chr3 (75-171)||(43454114-43454209)
chr3 (122-175)||(41419618-41419671)
chr3 (136-169)||(48626127-48626160)
chr3 (123-172)||(53344741-53344790)
chr3 (127-171)||(53503-53547)
chr3 (126-174)||(53344014-53344062)
[»] chr8 (16 HSPs)
chr8 (32-171)||(36402934-36403073)
chr8 (71-171)||(44376643-44376743)
chr8 (127-172)||(22632972-22633017)
chr8 (133-177)||(26847091-26847135)
chr8 (124-172)||(42094008-42094056)
chr8 (127-170)||(22632323-22632366)
chr8 (55-171)||(26132065-26132181)
chr8 (133-171)||(4402297-4402335)
chr8 (133-171)||(16911056-16911094)
chr8 (123-172)||(202576-202625)
chr8 (123-172)||(317413-317462)
chr8 (122-171)||(5434032-5434081)
chr8 (40-109)||(10331528-10331596)
chr8 (73-171)||(36402201-36402299)
chr8 (135-171)||(5434781-5434817)
chr8 (127-171)||(9277786-9277830)
[»] chr6 (7 HSPs)
chr6 (23-113)||(10965288-10965378)
chr6 (32-113)||(709380-709460)
chr6 (44-172)||(2138476-2138603)
chr6 (39-113)||(24981041-24981114)
chr6 (128-172)||(5312240-5312284)
chr6 (47-108)||(24980403-24980464)
chr6 (127-171)||(16718998-16719042)
[»] chr1 (14 HSPs)
chr1 (32-171)||(13416244-13416383)
chr1 (32-171)||(5490511-5490649)
chr1 (127-171)||(27746162-27746206)
chr1 (39-171)||(31109239-31109371)
chr1 (127-172)||(26240875-26240920)
chr1 (123-171)||(16449555-16449603)
chr1 (123-171)||(16459129-16459177)
chr1 (39-171)||(31116600-31116732)
chr1 (133-172)||(24848436-24848475)
chr1 (133-172)||(26240113-26240152)
chr1 (133-172)||(27745555-27745594)
chr1 (133-171)||(24847783-24847821)
chr1 (123-172)||(21257917-21257966)
chr1 (127-171)||(12449316-12449360)
[»] chr4 (19 HSPs)
chr4 (23-102)||(45140523-45140602)
chr4 (32-172)||(21281070-21281210)
chr4 (127-172)||(34941501-34941546)
chr4 (129-171)||(51386456-51386498)
chr4 (123-172)||(34450814-34450863)
chr4 (123-171)||(47157379-47157427)
chr4 (133-172)||(14527586-14527625)
chr4 (123-166)||(47156638-47156681)
chr4 (133-171)||(24666129-24666167)
chr4 (134-172)||(26354243-26354281)
chr4 (133-171)||(42792775-42792813)
chr4 (125-171)||(52129421-52129467)
chr4 (122-171)||(13924793-13924842)
chr4 (127-172)||(13925653-13925698)
chr4 (122-167)||(18363652-18363697)
chr4 (122-167)||(36599231-36599276)
chr4 (127-171)||(6057003-6057047)
chr4 (136-172)||(24666865-24666901)
chr4 (135-171)||(25055109-25055145)
[»] scaffold0006 (1 HSPs)
scaffold0006 (32-114)||(285919-286001)
[»] chr5 (12 HSPs)
chr5 (129-171)||(29595600-29595642)
chr5 (133-171)||(23257319-23257357)
chr5 (133-171)||(27345929-27345967)
chr5 (123-172)||(2029047-2029096)
chr5 (123-172)||(39936254-39936302)
chr5 (127-171)||(24565573-24565617)
chr5 (127-171)||(24606609-24606653)
chr5 (127-171)||(39937910-39937954)
chr5 (127-171)||(40372164-40372208)
chr5 (133-171)||(23253496-23253534)
chr5 (122-172)||(35524121-35524171)
chr5 (127-172)||(39466884-39466929)
[»] chr2 (9 HSPs)
chr2 (123-172)||(127735-127784)
chr2 (127-171)||(127033-127077)
chr2 (133-172)||(20606931-20606970)
chr2 (135-178)||(24394897-24394940)
chr2 (126-171)||(18537496-18537541)
chr2 (133-170)||(34595944-34595981)
chr2 (133-166)||(44297424-44297457)
chr2 (127-171)||(7754971-7755015)
chr2 (141-177)||(10365525-10365561)
[»] scaffold0627 (1 HSPs)
scaffold0627 (133-172)||(6463-6502)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 172 - 306
Target Start/End: Complemental strand, 31742789 - 31742655
Alignment:
Q  172 tgtaaaaacggaaaaatggtatctatatctttttgtcacagcctttttctcgataacttaccttttttaaaaccttgatcatttctctatccgttactct 271  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||||||    
T  31742789 tgtaaaaacgaaaaaatggtatccatatctttttgtcgcagcctttttctcggtaacttaccttttttaaaaccttgatcatttctcattcctttactct 31742690  T
Q  272 tccacctcaactaccaaaccaatcttatatctcct 306  Q
    |||||||||||||||||||||||||||||||||||    
T  31742689 tccacctcaactaccaaaccaatcttatatctcct 31742655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 767294 - 767136
Alignment:
Q  13 catagggtgtaaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatgg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  767294 catagggtgtaatcattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaattcgaataaatctgaaccatgtatttaatctaacgg 767195  T
Q  113 tgnnnnnnncgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||       | || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  767194 tgtttttttcatgatccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 27917843 - 27917761
Alignment:
Q  23 aaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaat 105  Q
    ||||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||    
T  27917843 aaccattaaaggataagattgaatgtgaatagttgtatatgttcctatttttaatttgaataaatctgaagcatgtatttaat 27917761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 24874487 - 24874627
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    ||||||||||||||| |||||| |||||||| ||  ||  |||||||||||||||||| |||||| ||||| |||||| |||        |||| |||||    
T  24874487 aggataggattgaatatgagtaattgtatatattctcacatttaatttgaataaatcttaaccatctattttatctaacggtatttttctcgtggtccac 24874586  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacct 172  Q
     | |||||||| ||||||||||||||| |||||||||||||    
T  24874587 cgatgagggacctaattgaaccctcaccctagaatccacct 24874627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 767875 - 768014
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||||| |||||| |||| |||| ||||| ||||| | ||        |||| |||||    
T  767875 aggataagattaaatgtaagtagttgtatatgttttcatttttaatttaaataaacctgatccatctattttatctacttgtatttttttcgtggtccac 767974  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacc 171  Q
     ||||||||||||||||| |||||||| ||| ||||||||    
T  767975 cggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 24873851 - 24873750
Alignment:
Q  71 ttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgagggacttaattgaaccctcactctagaatccac 170  Q
    ||||||||||||||||||| |||||  ||||||||||| |||||       | || ||||||| |||||||| |||||| |||||||| |||||||||||    
T  24873851 ttttaatttgaataaatctaaaccacttatttaatctattggtgtttttttcatggtccactgatgagggacctaattggaccctcaccctagaatccac 24873752  T
Q  171 ct 172  Q
    ||    
T  24873751 ct 24873750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 27918518 - 27918599
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggt 113  Q
    |||||||||||||||||||||||||||| || ||| || | ||  ||| ||||||| |||||||| ||||||||||| ||||    
T  27918518 aggataggattgaatgtgagtagttgtacatattttcactattgcttttaataaatatgaaccatctatttaatctattggt 27918599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 41617980 - 41618029
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  41617980 cgtggtccactggtgagagacttaattggaccctcactctagaatccacc 41618029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 46491692 - 46491739
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacctgt 174  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  46491692 tccaccggtgagggacttagttgaaccctcaccctagaatccacctgt 46491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 30581272 - 30581314
Alignment:
Q  129 cactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  30581272 cactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 34809005 - 34809038
Alignment:
Q  139 ggacttaattgaaccctcactctagaatccacct 172  Q
    ||||||||||||||||||||||||||||||||||    
T  34809005 ggacttaattgaaccctcactctagaatccacct 34809038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 41358975 - 41359020
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  41358975 tccactggtgatggacttaattgatccctcaccctagaatccacct 41359020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 41965776 - 41965825
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||| ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  41965776 cgtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 17114181 - 17114145
Alignment:
Q  135 tgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17114181 tgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 41617236 - 41617192
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||    
T  41617236 tccaccggtgagggacttaattgatcactcactctagaatccacc 41617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 42818557 - 42818601
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 3314993 - 3314946
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacctgtaaaaac 180  Q
    ||||||||||||||||||||||||||  ||||||||||| | ||||||    
T  3314993 ggtgagggacttaattgaaccctcaccgtagaatccacccgcaaaaac 3314946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 41965148 - 41965109
Alignment:
Q  135 tgagggacttaattgaaccctcactctagaatccacctgt 174  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  41965148 tgagggacttaattggaccctcaccctagaatccacctgt 41965109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 28007201 - 28007156
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| |||||||||||||||||  ||||||| |||||||||||||    
T  28007201 tccaccggtgagggacttaattgctccctcaccctagaatccacct 28007156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 36611589 - 36611556
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaat 166  Q
    |||||||||||||||||||||||||| |||||||    
T  36611589 ggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 36611498 - 36611542
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| |||||| || |||||||||||||||| ||||||||||||    
T  36611498 tccaccggtgagagatttaattgaaccctcaccctagaatccacc 36611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 44876944 - 44876980
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatcca 169  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  44876944 ggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 46491049 - 46491009
Alignment:
Q  132 tggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||| |||||||||||||||||||| ||| |||||||||    
T  46491049 tggtgatggacttaattgaaccctcaccctacaatccacct 46491009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 14746792 - 14746949
Alignment:
Q  13 catagggtgtaaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||    
T  14746792 catagggtgtaaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaattcgaataaatttgaaccatgtatttaatctaacgg 14746891  T
Q  113 tgnnnnnnncgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||       |||| ||||| | ||||||||||||||| |||||||| ||||||||||||    
T  14746892 tgtttttttcgtggtccaccgatgagggacttaattggaccctcac-ctagaatccacc 14746949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 35982653 - 35982557
Alignment:
Q  13 catagggtgtaaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaa 109  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  35982653 catagggtgtaactattaaagcataagattgaatgtgagtagttgtatatgtttctatttttaattcgaataaatctgaaccatgtatttaatctaa 35982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 43453587 - 43453439
Alignment:
Q  23 aaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnnc 122  Q
    |||||||  ||||||| |||||||||||||||||||| ||||| ||| ||||||||| ||||||| |||||||| ||||||||||| ||||        |    
T  43453587 aaccattttaggatagaattgaatgtgagtagttgtacatgttcccaattttaatttaaataaatttgaaccatctatttaatctattggtatttttctc 43453488  T
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||| ||||  ||||||||| ||||||| |||||||| ||||||||||||    
T  43453487 gtggtccagcggtgagggatttaattggaccctcaccctagaatccacc 43453439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 14746180 - 14746041
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    |||||| |||| |||||||||||  ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||| |       |||| |||||    
T  14746180 aggataagattaaatgtgagtagccgtatatgtttccatttttaatttaaataaatctgatccatctatttcatctagtggcgtttttttcgtggtccac 14746081  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacc 171  Q
     || |||||| ||||||| |||||||| ||||||||||||    
T  14746080 cggggagggatttaattggaccctcaccctagaatccacc 14746041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 42020795 - 42020934
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    |||||||||||||||||||||||||||| |||||| || | ||  ||| |||||||||||||||| ||||||||||| ||||        |||| |||||    
T  42020795 aggataggattgaatgtgagtagttgtacatgtttacactattgcttttaataaatctgaaccatctatttaatctattggtatttttttcgtgatccac 42020894  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacc 171  Q
     || ||| ||| |||||| |||||||| ||||||| ||||    
T  42020895 cggcgagagacctaattggaccctcaccctagaattcacc 42020934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 41418860 - 41418818
Alignment:
Q  71 ttttaatttgaataaatctgaaccatgtatttaatctaatggt 113  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  41418860 ttttaatttgaataaatctgaaccatttatttaatctaatggt 41418818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 16076317 - 16076209
Alignment:
Q  64 tttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgagggacttaattgaaccctcactctag 163  Q
    |||||| ||||||||| |||||||||||||||  | ||||||||| || |        |||| |||| ||||||||||| |||||| |||||||| ||||    
T  16076317 tttccacttttaatttaaataaatctgaaccacttgtttaatctattgatatttttctcgtggtccattggtgagggacctaattggaccctcaccctag 16076218  T
Q  164 aatccacct 172  Q
    |||||||||    
T  16076217 aatccacct 16076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 20807975 - 20807937
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  20807975 ggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 54308491 - 54308454
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccac 170  Q
    |||||||||||||||||||||||||| |||||||||||    
T  54308491 ggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 15287611 - 15287567
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  15287611 tccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 53346501 - 53346545
Alignment:
Q  128 ccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||    
T  53346501 ccaccggtgagggacttaattgaaccctcactgtagaattcacct 53346545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 54753620 - 54753576
Alignment:
Q  128 ccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||||||||||||||||||||||||||||  |||||| |||||    
T  54753620 ccactggtgagggacttaattgaaccctcaccgtagaattcacct 54753576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 9830616 - 9830573
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccac 170  Q
    ||||| |||||||||||||||||||||||||| | |||||||||    
T  9830616 tccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 47571243 - 47571196
Alignment:
Q  124 tgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||| ||| |||||||||||||||||| ||||||| ||||||||||||    
T  47571243 tgcttcaccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 49349723 - 49349676
Alignment:
Q  124 tgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||| ||| |||||||||||||||||| ||||||| ||||||||||||    
T  49349723 tgcttcaccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 49350283 - 49350318
Alignment:
Q  136 gagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||||||||||| ||||||||||||    
T  49350283 gagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 4706966 - 4707004
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  4706966 ggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 20808617 - 20808655
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  20808617 ggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 43454114 - 43454209
Alignment:
Q  75 aatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||| ||||| ||| |  ||||       |||| ||||| |||||||||| |||||| |||||||| ||||||||||||    
T  43454114 aatttgaataaatctgaaccatctattttatccatcggtgttttct-cgtggtccacaggtgagggacctaattggaccctcaccctagaatccacc 43454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 41419618 - 41419671
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatccacctgta 175  Q
    |||| ||||| |||||||||| ||||||  ||||||| ||||||||||||||||    
T  41419618 cgtggtccaccggtgagggacctaattggcccctcacactagaatccacctgta 41419671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 48626127 - 48626160
Alignment:
Q  136 gagggacttaattgaaccctcactctagaatcca 169  Q
    ||||||||||||||||||||||| ||||||||||    
T  48626127 gagggacttaattgaaccctcaccctagaatcca 48626160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 53344741 - 53344790
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||| |||||||||||| ||||| ||||||| |||||||||||||    
T  53344741 gtgcttcaccggtgagggacttgattgatccctcaccctagaatccacct 53344790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 53547 - 53503
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||| ||||||| |||||  |||||||||||    
T  53547 tccactggtgagggacttgattgaactctcaccatagaatccacc 53503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 53344062 - 53344014
Alignment:
Q  126 ctccactggtgagggacttaattgaaccctcactctagaatccacctgt 174  Q
    |||||| |||||||||||| ||||| ||||||  |||||||||||||||    
T  53344062 ctccaccggtgagggacttgattgatccctcatcctagaatccacctgt 53344014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 36402934 - 36403073
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    ||||||||||||||| |||||| |||||||||||  || ||||||||||||||||||| |||||| ||||| ||||||  |||       |||| |||||    
T  36402934 aggataggattgaatatgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaactgtgtttttctcgtggtccac 36403033  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacc 171  Q
     |||||||||| |||||| |||||||||||||||||||||    
T  36403034 cggtgagggacctaattggaccctcactctagaatccacc 36403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 44376743 - 44376643
Alignment:
Q  71 ttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgagggacttaattgaaccctcactctagaatccac 170  Q
    |||||||||||||||||||||||||| |||||||| || ||||        |||| ||||| | |||||||| |||||| |||||| | |||||||||||    
T  44376743 ttttaatttgaataaatctgaaccatctatttaatttattggtatttttttcgtggtccaccgatgagggacgtaattggaccctcgccctagaatccac 44376644  T
Q  171 c 171  Q
    |    
T  44376643 c 44376643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 22632972 - 22633017
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||    
T  22632972 tccaccggtgagggacttaattgatccctcaccctagaatccacct 22633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 26847135 - 26847091
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacctgtaaa 177  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  26847135 ggtgagggacttaattggaccctcaccctagaatccacctctaaa 26847091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 42094056 - 42094008
Alignment:
Q  124 tgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||| ||| |||||||||||||||||| ||||||| |||||||||||||    
T  42094056 tgcttcaccggtgagggacttaattgatccctcaccctagaatccacct 42094008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 22632366 - 22632323
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccac 170  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||    
T  22632366 tccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 26132065 - 26132181
Alignment:
Q  55 ttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgagggacttaattgaaccc 154  Q
    |||||||||||  || ||||||||| ||||||||| |||||| ||||| |||||| ||||       |||| |||||  ||||||||| |||||| ||||    
T  26132065 ttgtatatgttctcacttttaatttcaataaatcttaaccatctattttatctaacggtgtttttctcgtggtccaccagtgagggacctaattggaccc 26132164  T
Q  155 tcactctagaatccacc 171  Q
    ||||  || ||||||||    
T  26132165 tcaccttaaaatccacc 26132181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 4402297 - 4402335
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  4402297 ggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 16911056 - 16911094
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  16911056 ggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 202625 - 202576
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||| |||||||||||||||||||||||||  ||||||| |||||    
T  202625 gtgcttcaccggtgagggacttaattgaaccctcatcctagaattcacct 202576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 317462 - 317413
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||| |||||||||||||||||||||||||  ||||||| |||||    
T  317462 gtgcttcaccggtgagggacttaattgaaccctcatcctagaattcacct 317413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 5434081 - 5434032
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||| ||||| ||||| ||||||||||| |||||||| ||||||||||||    
T  5434081 cgtggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 10331596 - 10331528
Alignment:
Q  40 attgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaa 109  Q
    ||||||||| |||| ||||| |||||   |||||||||| ||||||||||||||||| ||||| ||||||    
T  10331596 attgaatgtcagtaattgtacatgttcttatttttaatt-gaataaatctgaaccatctatttcatctaa 10331528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 36402299 - 36402201
Alignment:
Q  73 ttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||| ||| | |||||| ||||||||||| |||||       |||| ||||| |||| ||||| |||||| |||||||| ||| ||||||||    
T  36402299 ttaatttgaatgaatttaaaccatttatttaatctattggtgtttttttcgtggtccaccggtgtgggacctaattggaccctcaccctaaaatccacc 36402201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 5434781 - 5434817
Alignment:
Q  135 tgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||| || ||||||||||||||||||    
T  5434781 tgagggacttaattggactctcactctagaatccacc 5434817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 9277786 - 9277830
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||| ||||||||||||||||||  ||||||| ||||||||||||    
T  9277786 tccattggtgagggacttaattgctccctcaccctagaatccacc 9277830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 10965378 - 10965288
Alignment:
Q  23 aaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggt 113  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||    
T  10965378 aaccattttaggataggattgaatgtgagtagttgtacatgtttccacttttaatttaaataaatttgaaccatctatttaatctaatggt 10965288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 709460 - 709380
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggt 113  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  709460 aggataggattgaatgtgagtagttgtacatatttc-atttttaatttgaataaatctgaaccatctatttaatctattggt 709380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 2138603 - 2138476
Alignment:
Q  44 aatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgagggact 143  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||| |||||| |||||||| || ||||        |||| ||||| ||||||||||     
T  2138603 aatgtgagtagttgtacatgtttc-acttttaatttgaataaatctcaaccatctatttaatttattggtatttttctcgtggtccaccggtgagggacc 2138505  T
Q  144 taattgaaccctcactctagaatccacct 172  Q
    |||||| |||||||| ||||||| |||||    
T  2138504 taattggaccctcaccctagaattcacct 2138476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 24981041 - 24981114
Alignment:
Q  39 gattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggt 113  Q
    |||||||||||||||||||||||| |||  |||||||| ||| ||||||||||| ||| ||||||||||| ||||    
T  24981041 gattgaatgtgagtagttgtatatatttttatttttaa-ttggataaatctgaatcatctatttaatctagtggt 24981114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 5312284 - 5312240
Alignment:
Q  128 ccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  5312284 ccactggtgagggacttaattgaaccctcactgtagaattcacct 5312240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 24980464 - 24980403
Alignment:
Q  47 gtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatcta 108  Q
    |||| ||||||||||| |||||| ||||||||| ||||||| | |||||| ||||| |||||    
T  24980464 gtgaatagttgtatatatttccacttttaatttaaataaatttaaaccatctatttcatcta 24980403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 16718998 - 16719042
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| |||||||||||||||||| || |||| ||||||||||||    
T  16718998 tccaccggtgagggacttaattgatccgtcaccctagaatccacc 16719042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 13416244 - 13416383
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    |||||||||||||||||||||| |||||||||||  || |||||||||||||| |||| |||||| ||||| |||||| ||||       |||| |||||    
T  13416244 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaatatatcttaaccatctattttatctaacggtgtttttctcgtggtccac 13416343  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacc 171  Q
     || ||||||| |||||| |||||||  ||||||||||||    
T  13416344 cggcgagggacctaattggaccctcatcctagaatccacc 13416383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 5490649 - 5490511
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    |||||||||||||||||||||| |||||||||||   | ||||||||||||||||||| |||||| ||||| || ||| ||||       |||| |||||    
T  5490649 aggataggattgaatgtgagtaattgtatatgttcttacttttaatttgaataaatcttaaccatctattttatttaacggtgtttttctcgtggtccac 5490550  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacc 171  Q
     | |||| ||| ||||||||||||||| ||||||||||||    
T  5490549 cgatgagagacctaattgaaccctcac-ctagaatccacc 5490511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 27746162 - 27746206
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 31109371 - 31109239
Alignment:
Q  39 gattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgag 138  Q
    ||||||||||||| || | || ||||| ||| ||||||||| |||||||||||||||  | ||||||||| ||||        |||  ||||| ||||||    
T  31109371 gattgaatgtgagcagctctacatgttcccacttttaatttaaataaatctgaaccacttgtttaatctattggtatttttctcgtagtccaccggtgag 31109272  T
Q  139 ggacttaattgaaccctcactctagaatccacc 171  Q
    |||| |||||| |||||||| ||||||||||||    
T  31109271 ggacctaattggaccctcaccctagaatccacc 31109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 26240875 - 26240920
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  26240875 tccaccggtgagggacttaattgaaccctcaccctagaatccacct 26240920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 16449603 - 16449555
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  16449603 gtgcttcaccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 16459177 - 16459129
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  16459177 gtgcttcaccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 31116600 - 31116732
Alignment:
Q  39 gattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccactggtgag 138  Q
    ||||||||||||| |||| |  ||||| ||| ||||||||| ||||||| || ||||  ||||||||||| ||||        |||  ||||| ||||||    
T  31116600 gattgaatgtgagcagttctccatgttcccacttttaatttaaataaatatgtaccacttatttaatctattggtatttttctcgtagtccaccggtgag 31116699  T
Q  139 ggacttaattgaaccctcactctagaatccacc 171  Q
    |||| |||||| |||||||| ||||||||||||    
T  31116700 ggacctaattggaccctcaccctagaatccacc 31116732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 24848436 - 24848475
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  24848436 ggtgagggacttaatagaaccctcaccctagaatccacct 24848475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 26240152 - 26240113
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  26240152 ggtgagggacttaattgatccctcaccctagaatccacct 26240113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 27745594 - 27745555
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  27745594 ggtgagggacttaattgaaccctcaccttagaatccacct 27745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 24847821 - 24847783
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  24847821 ggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 21257917 - 21257966
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||||||||||| ||||||||||||||||||  |||||| |||||    
T  21257917 gtgcttcactggtgaggaacttaattgaaccctcaccttagaatgcacct 21257966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 12449316 - 12449360
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| |||||||||||||||||| ||||||| ||| ||||||||    
T  12449316 tccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 45140602 - 45140523
Alignment:
Q  23 aaccattaaaggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtattt 102  Q
    |||||||  ||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||    
T  45140602 aaccattttaggataggattaaatgtgagtagttgtacatgttcccacttttaatttgaataaatctgaaccatctattt 45140523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 21281070 - 21281210
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtgnnnnnnncgtgctccac 131  Q
    |||||| ||||||||||| ||| |||||||||||  || ||||||||||||||||| | |||||| ||||| |||||| ||||       |||| |||||    
T  21281070 aggataagattgaatgtgtgtaattgtatatgttctcacttttaatttgaataaattttaaccatctattttatctaacggtgtttttctcgtggtccac 21281169  T
Q  132 tggtgagggacttaattgaaccctcactctagaatccacct 172  Q
     | |||||||  |||||| |||||||| |||||||||||||    
T  21281170 cgatgagggatctaattggaccctcaccctagaatccacct 21281210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 34941546 - 34941501
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  34941546 tccactagtgagggacttaattgaaccctcaccctagaatccacct 34941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 51386498 - 51386456
Alignment:
Q  129 cactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  51386498 cactggtgagggacttaattgaaccctcaccctaaaatccacc 51386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 34450863 - 34450814
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||| |||||    
T  34450863 gtgctccaccggtgagggacttaattgatccctcaccctagaattcacct 34450814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 47157379 - 47157427
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  47157379 gtgctccaccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 14527586 - 14527625
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  14527586 ggtgagggacttaattgatccctcaccctagaatccacct 14527625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 47156681 - 47156638
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaat 166  Q
    ||||||||| | |||||||||||||||||||||||| |||||||    
T  47156681 gtgctccaccgatgagggacttaattgaaccctcaccctagaat 47156638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 24666167 - 24666129
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  24666167 ggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 26354243 - 26354281
Alignment:
Q  134 gtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  26354243 gtgagggacttaattgaaccctcaccctagaacccacct 26354281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 42792813 - 42792775
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  42792813 ggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 52129467 - 52129421
Alignment:
Q  125 gctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||  |||||||||||||||||||||||||  |||||||||||    
T  52129467 gctccaccagtgagggacttaattgaaccctcaccttagaatccacc 52129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 13924842 - 13924793
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||| ||||| ||||||||| |||||||| ||||||| ||||||||||||    
T  13924842 cgtggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 13925653 - 13925698
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||||||||||||| |||| |||||||| ||||||||||||    
T  13925653 tccaccggtgagggacttagttgatccctcactttagaatccacct 13925698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 18363652 - 18363697
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatc 167  Q
    |||| ||||| ||||||| |||||||||||||||||| ||||||||    
T  18363652 cgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 36599276 - 36599231
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatc 167  Q
    |||| ||||| ||||||| |||||||||||||||||| ||||||||    
T  36599276 cgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 6057003 - 6057047
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||||||||||||| | |||||||||| ||||||||||||    
T  6057003 tccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 24666865 - 24666901
Alignment:
Q  136 gagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  24666865 gagggacttaattgaaccctcaccctataatccacct 24666901  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 25055145 - 25055109
Alignment:
Q  135 tgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  25055145 tgaggaacttaattgaaccctcaccctagaatccacc 25055109  T

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Target: scaffold0006 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 285919 - 286001
Alignment:
Q  32 aggataggattgaatgtgagtagttgtatatgtttccatttttaatttgaataaatctgaaccatgtatttaatctaatggtg 114  Q
    |||||||||||||||||||||| |||||||||||  || ||||||||||||||||||| |||||| ||||| |||||| ||||    
T  285919 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggtg 286001  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 29595600 - 29595642
Alignment:
Q  129 cactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  29595600 cactggtgagggacttaattgaaccctcacgctagaatccacc 29595642  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 23257357 - 23257319
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  23257357 ggtgagggacttaattggaccctcactctagaatccacc 23257319  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 27345929 - 27345967
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  27345929 ggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 2029047 - 2029096
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||| |||||||||||||||||| ||||||| |||||||||||||    
T  2029047 gtgcttcaccggtgagggacttaattgagccctcaccctagaatccacct 2029096  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 39936302 - 39936254
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  39936302 gtgctcca-tggtgagggacttaattgaaccctcaccttagaatccacct 39936254  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 24565617 - 24565573
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||    
T  24565617 tccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 24606653 - 24606609
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||    
T  24606653 tccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 39937910 - 39937954
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  39937910 tccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 40372164 - 40372208
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  40372164 tccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 23253496 - 23253534
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  23253496 ggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 35524171 - 35524121
Alignment:
Q  122 cgtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||| ||||| |||||||||||||||||||| ||||  |||||||||||||    
T  35524171 cgtggtccaccggtgagggacttaattgaactctcatcctagaatccacct 35524121  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 39466929 - 39466884
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||||    
T  39466929 tccaccggtgagggacttaattggaccctcaccctagaattcacct 39466884  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 127735 - 127784
Alignment:
Q  123 gtgctccactggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    ||||| ||| ||||| |||||||||||||||||||| |||||||||||||    
T  127735 gtgcttcaccggtgaaggacttaattgaaccctcaccctagaatccacct 127784  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 127077 - 127033
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||    
T  127077 tccactgatgagggacttagttgaaccctcaccctagaatccacc 127033  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 20606931 - 20606970
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  20606931 ggtgagggacttaattgaaccctcaccctagaattcacct 20606970  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 24394897 - 24394940
Alignment:
Q  135 tgagggacttaattgaaccctcactctagaatccacctgtaaaa 178  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||    
T  24394897 tgagggacttaattgatcccccactctagaatccacctataaaa 24394940  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 18537496 - 18537541
Alignment:
Q  126 ctccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    |||||| |||||||||||||||||||||||||   |||||||||||    
T  18537496 ctccaccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 34595944 - 34595981
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccac 170  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  34595944 ggtgagggatttagttgaaccctcactctagaatccac 34595981  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 44297424 - 44297457
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaat 166  Q
    |||||||||||||||||||||||||| |||||||    
T  44297424 ggtgagggacttaattgaaccctcaccctagaat 44297457  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 7754971 - 7755015
Alignment:
Q  127 tccactggtgagggacttaattgaaccctcactctagaatccacc 171  Q
    ||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  7754971 tccaccggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 10365525 - 10365561
Alignment:
Q  141 acttaattgaaccctcactctagaatccacctgtaaa 177  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  10365525 acttaattgatccctcaccctagaatccacctgtaaa 10365561  T

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Target: scaffold0627 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 6502 - 6463
Alignment:
Q  133 ggtgagggacttaattgaaccctcactctagaatccacct 172  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  6502 ggtgagggacttaattgaaccctcaccctagaacccacct 6463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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