View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_22 (Length: 315)
Name: NF1841_low_22
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 25582511 - 25582228
Alignment:
| Q |
17 |
actttgtaaccagttaaaatagattgtatggcccactttttggttgttgtaaaatctcatgaagcatgatggctggtaaaccaatctaaccgatgtatac |
116 |
Q |
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| T |
25582511 |
actttgtaaccagttaaaatagattgtatggcccactttttggttgttgtaaaatctcatgaagcatgatggctggtaaaccaatctaaccgatgtatac |
25582412 |
T |
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| Q |
117 |
agctaggtccactacaaaattgaccacctgagaagctaaatagtgtgactcaagtgaacgtcaacaactttgacacgtaacttttctgcaagattaacta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25582411 |
agctaggtccactacaaaattgaccacctgagaagctaaatagtgtgactcaagtgaacgtcaacaactttgacacgtaacttttctgcaagattaacta |
25582312 |
T |
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| Q |
217 |
ataatataaaagtgtctaa---gtgaaatcctaagcttggatgggacccaaatatgaaaatatgttgaagtcctaaggatatat |
297 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25582311 |
ataatataaaagtgtctaagtggtgaaatcctaagcttggatgggacccaaatatgaaaatatgttgaagtcctaaggatatat |
25582228 |
T |
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