View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_23 (Length: 313)

Name: NF1841_low_23
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_23
NF1841_low_23
[»] chr3 (6 HSPs)
chr3 (244-313)||(27237342-27237411)
chr3 (240-313)||(497684-497757)
chr3 (245-313)||(22418848-22418916)
chr3 (248-313)||(50386160-50386225)
chr3 (248-312)||(7147179-7147243)
chr3 (251-313)||(3541699-3541761)
[»] chr5 (10 HSPs)
chr5 (245-313)||(13475554-13475622)
chr5 (248-313)||(971737-971802)
chr5 (242-313)||(34225999-34226070)
chr5 (244-313)||(33798726-33798795)
chr5 (248-313)||(25981460-25981525)
chr5 (260-313)||(3059293-3059346)
chr5 (244-313)||(33727447-33727516)
chr5 (248-301)||(39421301-39421354)
chr5 (260-313)||(11773313-11773366)
chr5 (244-313)||(26326981-26327050)
[»] chr4 (4 HSPs)
chr4 (245-313)||(47286604-47286672)
chr4 (240-313)||(15545057-15545130)
chr4 (248-313)||(2917620-2917685)
chr4 (245-313)||(4940065-4940133)
[»] chr8 (6 HSPs)
chr8 (244-313)||(7351392-7351461)
chr8 (248-313)||(29246835-29246900)
chr8 (245-313)||(14443057-14443125)
chr8 (246-313)||(35702140-35702207)
chr8 (248-301)||(16428095-16428148)
chr8 (242-311)||(11920625-11920694)
[»] chr7 (12 HSPs)
chr7 (244-313)||(33081874-33081943)
chr7 (248-313)||(46912927-46912992)
chr7 (245-313)||(36616865-36616933)
chr7 (245-313)||(46457680-46457748)
chr7 (248-313)||(46357785-46357850)
chr7 (245-313)||(28998315-28998383)
chr7 (245-313)||(42896849-42896917)
chr7 (246-313)||(4519744-4519811)
chr7 (245-303)||(34643966-34644024)
chr7 (244-301)||(23041595-23041652)
chr7 (260-313)||(31670613-31670666)
chr7 (244-313)||(43998115-43998184)
[»] chr1 (7 HSPs)
chr1 (248-313)||(32942289-32942354)
chr1 (245-313)||(37188206-37188274)
chr1 (248-313)||(33403758-33403823)
chr1 (248-313)||(38741308-38741373)
chr1 (246-313)||(11943666-11943733)
chr1 (248-313)||(2123582-2123647)
chr1 (248-313)||(50158913-50158978)
[»] chr6 (4 HSPs)
chr6 (245-313)||(13850751-13850819)
chr6 (246-313)||(6174375-6174442)
chr6 (245-313)||(595743-595811)
chr6 (248-313)||(843659-843724)
[»] chr2 (3 HSPs)
chr2 (248-313)||(918031-918096)
chr2 (248-313)||(41911799-41911864)
chr2 (245-313)||(9929327-9929395)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 27237342 - 27237411
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27237342 gcaggggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 27237411  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 497684 - 497757
Alignment:
Q  240 ggaggcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||| ||||||||| | |||| |||||||||||||||||||  |||||||||||||||| |||||||||||    
T  497684 ggaggcatgggcggatctagacatatgatattggtgtggcaaaactttcaaatcaactatatatattaacaaag 497757  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 22418916 - 22418848
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||    
T  22418916 caggggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaag 22418848  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 50386225 - 50386160
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  50386225 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 50386160  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 7147179 - 7147243
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaa 312  Q
    ||||||||| | ||| ||||||||||||||||||||| | ||||  |||||||| ||||||||||    
T  7147179 gggcggatctagacagttgatattggtgtggcaaaatttgcaaagaaactatatatattaacaaa 7147243  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 3541699 - 3541761
Alignment:
Q  251 cggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||| || |||||||||||||||||| |||||| ||||||  |||||||| |||||| ||||    
T  3541699 cggatgcagacatttgatattggtgtgacaaaattttcaaagtaactatatatattaataaag 3541761  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 13475554 - 13475622
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13475554 caggggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 13475622  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 971737 - 971802
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  971737 gggcggatccagacatttgataatagtgtggcaaaacattcaaatcaactatatttattaacaaag 971802  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 34226070 - 34225999
Alignment:
Q  242 aggcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||| ||||||||| | ||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  34226070 aggcatgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 34225999  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 33798795 - 33798726
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||| | ||||||||||||||| ||||||||  |||||| ||||||||| |||||||||||    
T  33798795 gcaggggcggatctagacatttgatattggtttggcaaaactttcaaaacaactatatgtattaacaaag 33798726  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 25981525 - 25981460
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||| ||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  25981525 gggcggatctagacattcgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 25981460  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 3059346 - 3059293
Alignment:
Q  260 acatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||||||||||||||  ||||||  |||||||| |||||||||||    
T  3059346 acatttgatattggtgtggcaaaactttcaaagtaactatatatattaacaaag 3059293  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 33727516 - 33727447
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||| | ||||||||||||||| ||| ||||  ||||||  |||||||| |||||||||||    
T  33727516 gcaggggcggatctagacatttgatattggtttggtaaaactttcaaaataactatatatattaacaaag 33727447  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 39421354 - 39421301
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatat 301  Q
    ||||| ||||| ||||||||||||||||||||||||  |||||| |||||||||    
T  39421354 gggcgaatccatacatttgatattggtgtggcaaaactttcaaagcaactatat 39421301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 11773366 - 11773313
Alignment:
Q  260 acatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||| |||||| ||||    
T  11773366 acatttgattttggtgtggcaaaattttcaaagcaattatatatattaataaag 11773313  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 26327050 - 26326981
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||| |||||||| | ||||||||||||||||| ||||||  ||||||  |||||| | |||||||||||    
T  26327050 gcagaggcggatctagacatttgatattggtgtagcaaaactttcaaagaaactatgtatattaacaaag 26326981  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 47286604 - 47286672
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47286604 caggggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 47286672  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 15545130 - 15545057
Alignment:
Q  240 ggaggcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||    
T  15545130 ggaggcaggggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaag 15545057  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 2917620 - 2917685
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  2917620 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 2917685  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 4940133 - 4940065
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||| | | | ||||||||||||||||||||| | ||||  |||||||| |||||||||||    
T  4940133 caggggcggatctagagagttgatattggtgtggcaaaatttgcaaaggaactatatatattaacaaag 4940065  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 7351392 - 7351461
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7351392 gcaggggcggatccagacatttgatattggtgtggcaaaatatttaaatcaactatatttattaacaaag 7351461  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 29246835 - 29246900
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||| ||||||||||  |||||| ||||||||| |||||||||||    
T  29246835 gggcggatctagacatttgatattgatgtggcaaaactttcaaagcaactatatatattaacaaag 29246900  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 14443125 - 14443057
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||| |||||||| ||| ||||||||||||||||||||| | ||||  |||||||| |||||||||||    
T  14443125 cagggacggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaag 14443057  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 35702207 - 35702140
Alignment:
Q  246 aggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||| | ||| ||||||||||||||||||||||||  ||||||  |||||||| |||||||||||    
T  35702207 aggggcgaacccagacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaag 35702140  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 16428095 - 16428148
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatat 301  Q
    ||||||||||| ||||||||||||| ||||||||||  ||||||| ||||||||    
T  16428095 gggcggatccagacatttgatattgatgtggcaaaactttcaaataaactatat 16428148  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 11920625 - 11920694
Alignment:
Q  242 aggcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaa 311  Q
    ||||||||||||||| | | | |||||||||||||||| |||| | ||||  |||||||| |||||||||    
T  11920625 aggcaggggcggatctagagagttgatattggtgtggcgaaatttgcaaagaaactatatatattaacaa 11920694  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 33081943 - 33081874
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33081943 gcagaggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 33081874  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 46912927 - 46912992
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  46912927 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 46912992  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 36616865 - 36616933
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||| | ||||||||||||||||||| ||||| ||||||  |||||||| |||||||||||    
T  36616865 caggggcggatctagacatttgatattggtgtggtaaaattttcaaacaaactatatatattaacaaag 36616933  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 46457680 - 46457748
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||||| ||| ||||||||||||||||||||| | ||||  |||||||| |||||||||||    
T  46457680 caggggcggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaag 46457748  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 46357785 - 46357850
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  ||||||  |||||||| |||||||||||    
T  46357785 gggcggatctagacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaag 46357850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 28998383 - 28998315
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||| ||||||| ||| ||||||||||| ||||||||| | |||| ||||||||| |||||||||||    
T  28998383 caggggtggatccagacaattgatattggtatggcaaaatttgcaaagcaactatatatattaacaaag 28998315  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 42896849 - 42896917
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||| | ||||||||||||||||||||||||  || |||  |||||||| |||||||||||    
T  42896849 caggggcggatctagacatttgatattggtgtggcaaaacttttaaaaaaactatatatattaacaaag 42896917  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 4519811 - 4519744
Alignment:
Q  246 aggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||| ||||| | |||||||||||||||||| |||||  | |||| ||||||||| |||||||||||    
T  4519811 aggggtggatctagacatttgatattggtgtgacaaaacttgcaaagcaactatatatattaacaaag 4519744  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 34644024 - 34643966
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatattt 303  Q
    ||||| |||||||| ||| || |||||||||||||||||| | |||| |||||||||||    
T  34644024 cagggacggatccagacagttaatattggtgtggcaaaatttgcaaagcaactatattt 34643966  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 23041595 - 23041652
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatat 301  Q
    ||||| ||||||||| ||| ||||||||||||||||||||| |  ||| |||||||||    
T  23041595 gcaggagcggatccagacagttgatattggtgtggcaaaatttgaaaagcaactatat 23041652  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 31670666 - 31670613
Alignment:
Q  260 acatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||||||||  ||||| | |||| ||||||||| |||||||||||    
T  31670666 acatttgatattggtgtgataaaatttccaaaacaactatatatattaacaaag 31670613  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 43998115 - 43998184
Alignment:
Q  244 gcaggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||| |||||||||| | | |||||||||||||| |||||| | ||||  |||||||| |||||||||||    
T  43998115 gcagaggcggatccagagagttgatattggtgtgacaaaatttgcaaagtaactatatatattaacaaag 43998184  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 32942354 - 32942289
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32942354 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 32942289  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 37188274 - 37188206
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||    
T  37188274 caggggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaag 37188206  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 33403823 - 33403758
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  33403823 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 33403758  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 38741373 - 38741308
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  38741373 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 38741308  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 11943666 - 11943733
Alignment:
Q  246 aggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||| | |||||||||||| |||||||||||| ||||||  |||||||| |||||||||||    
T  11943666 aggggcggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaag 11943733  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 2123582 - 2123647
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | |||||||||||||||||| |||||  |||||| ||||||||| |||||||||||    
T  2123582 gggcggatctagacatttgatattggtgtgacaaaactttcaaagcaactatatatattaacaaag 2123647  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 50158978 - 50158913
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  |||||| |||| |||| |||||||||||    
T  50158978 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaaccatatatattaacaaag 50158913  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 13850819 - 13850751
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13850819 caggagcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 13850751  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 6174375 - 6174442
Alignment:
Q  246 aggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||    
T  6174375 aggggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaag 6174442  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 595811 - 595743
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    |||||| ||||| | |||||||||||| |||||||||||| ||||||  |||||||| |||||||||||    
T  595811 caggggtggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaag 595743  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 843724 - 843659
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| |||||||||||||||||||| |||||  || ||| ||||||||| |||||| ||||    
T  843724 gggcggatctaaacatttgatattggtgtgacaaaacttttaaaacaactatatatattaataaag 843659  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 918096 - 918031
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| ||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  918096 gggcggatctaaacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaag 918031  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 41911864 - 41911799
Alignment:
Q  248 gggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||||| | ||||||||||||||||||||||||  |||||| |||| |||| |||||||||||    
T  41911864 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaacaatatatattaacaaag 41911799  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 9929395 - 9929327
Alignment:
Q  245 caggggcggatccaaacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaag 313  Q
    ||||||| || ||||||||||||| ||||||||||||||  ||||||  || ||||| |||||||||||    
T  9929395 caggggcagacccaaacatttgattttggtgtggcaaaactttcaaagaaaatatatatattaacaaag 9929327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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