View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_25 (Length: 301)
Name: NF1841_low_25
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38137756 - 38137513
Alignment:
| Q |
1 |
atcaattattattgataaccaatataaaagatgttgaatgaattatttatttaggtgtaggaagttacatgaaataaatgtttagttaacatatgtgtga |
100 |
Q |
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| T |
38137756 |
atcaaatattattgatcaccaatataaaagacgttgcatgatttatttattttggtgcaggatgttacatgaacttaatgtttggttaacatatgtgtgt |
38137657 |
T |
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| Q |
101 |
agtacaaaagtcttgtaagaagaaatggaaaggatgattctaggagggatttgggaggtgccacattggaatatacgcgacatgacaaatattatgcgac |
200 |
Q |
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| T |
38137656 |
agcacaaaagtcttgtaagaagaaatggaaaggatgattctaggagggatttgggaggtgccacattggaatatacgcgacatgaaaaatattatgcgac |
38137557 |
T |
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| Q |
201 |
gtaataaacgatgaggtgtcgacagacaaatttggagtctaatt |
244 |
Q |
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| T |
38137556 |
gtaataaacgatgaggtgtcgacagacaaatttggagtctaatt |
38137513 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 5555494 - 5555436
Alignment:
| Q |
123 |
aaatggaaaggatgattctaggagggatttgggaggtgccacattggaatatacgcgac |
181 |
Q |
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| T |
5555494 |
aaatagaaaggaggattctaggaggaattttggaggtgccgcattggaatatatgcgac |
5555436 |
T |
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