View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_27 (Length: 278)

Name: NF1841_low_27
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_27
NF1841_low_27
[»] chr5 (22 HSPs)
chr5 (163-258)||(30481915-30482014)
chr5 (163-258)||(29870769-29870868)
chr5 (167-258)||(30434409-30434504)
chr5 (103-164)||(29851735-29851796)
chr5 (163-258)||(30058880-30058970)
chr5 (163-258)||(30748226-30748325)
chr5 (103-159)||(29870646-29870702)
chr5 (163-210)||(30243846-30243894)
chr5 (163-217)||(30340004-30340059)
chr5 (66-100)||(30714756-30714790)
chr5 (171-258)||(29851892-29851981)
chr5 (103-159)||(30058757-30058813)
chr5 (103-151)||(30481792-30481840)
chr5 (219-258)||(30678654-30678693)
chr5 (198-258)||(17419312-17419373)
chr5 (68-97)||(29870580-29870609)
chr5 (229-258)||(30243793-30243822)
chr5 (67-100)||(30678954-30678987)
chr5 (67-95)||(30244072-30244100)
chr5 (67-95)||(30434201-30434229)
chr5 (168-217)||(30678707-30678758)
chr5 (163-222)||(30714546-30714606)
[»] chr4 (3 HSPs)
chr4 (98-159)||(20298317-20298378)
chr4 (228-258)||(20298168-20298198)
chr4 (68-97)||(20298405-20298434)
[»] chr7 (1 HSPs)
chr7 (167-210)||(26705848-26705892)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 30481915 - 30482014
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 258  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||   ||   |||||| | |||||||||||||||||||||||||||    
T  30481915 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaactgtatttttggaatatgagctatcttgtccc 30482014  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 29870769 - 29870868
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 258  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||   ||   |||||| | || ||||||||||||||||||||||||    
T  29870769 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaactgtattattggaatatgagctatcttgtccc 29870868  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 30434409 - 30434504
Alignment:
Q  167 gatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 258  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| |||||| |  |   | |||||| || ||||||||||||||||||||||||    
T  30434409 gatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaaacatcaatcaactctattcttggaatatgagctatcttgtccc 30434504  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 29851735 - 29851796
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaatatataa 164  Q
    |||||| ||||||||||| ||  |||||||||| |||||||||||||||||| |||||||||    
T  29851735 atgtaccctggatctcttcctacggaatgggttacaaagaagtcaacaatgagaatatataa 29851796  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 30058880 - 30058970
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttcttataacttaaactctctttttggaatatgagctatcttgtccc 258  Q
    ||||||||||||||||||| | || ||||||| |||||||||||||||| ||||||      ||||| | ||||||||||||||| |||||||||||    
T  30058880 aattgatttttgcgatggttaatgaggcagataagggtaaacgtctctgcttctta------aaactgtatttttggaatatgagatatcttgtccc 30058970  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 30748226 - 30748325
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 258  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||||||||| ||||||   ||   |||||  | |||||||||||||||||||||||||||    
T  30748226 aattgaattttgcgattgtgattgaggcagataagggtaaacgtctctgcttcttaatcctctgtaaacagtatttttggaatatgagctatcttgtccc 30748325  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 29870646 - 29870702
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 159  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||| ||||||| ||||    
T  29870646 atgtactctggatctcttcctgcggaatgggttccaaagatgtcgacaatgagaata 29870702  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 30243894 - 30243846
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctg 210  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  30243894 aattgatttttgcgatggtgattgaggcagataagggtaaacgtctctg 30243846  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 30340059 - 30340004
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttctta 217  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  30340059 aattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttctta 30340004  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 30714790 - 30714756
Alignment:
Q  66 ttatgatgaagaaaattacctgaattagaacaatt 100  Q
    |||||||||||||||||||||||||||||||||||    
T  30714790 ttatgatgaagaaaattacctgaattagaacaatt 30714756  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 29851892 - 29851981
Alignment:
Q  171 tttgcgatggtgattgtggc-agata-gggtaaacgtctctgtttcttataacttaaactctctttttggaatatgagctatcttgtccc 258  Q
    |||||||||||||||| ||| ||||| ||||||| ||||||| ||||||  | ||||||| | | ||||||||||||| |||||||||||    
T  29851892 tttgcgatggtgattgaggccagataagggtaaatgtctctgcttcttaatagttaaactgtatatttggaatatgagatatcttgtccc 29851981  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 30058757 - 30058813
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 159  Q
    |||||||||||||||||| |||  |||||||||||||||| ||| ||||||| ||||    
T  30058757 atgtactctggatctcttcctgcagaatgggttccaaagatgtcgacaatgagaata 30058813  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 30481792 - 30481840
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaa 151  Q
    ||||| |||||||||||| ||| ||||||||||||||| ||||||||||    
T  30481792 atgtagtctggatctcttcctgcggaatgggttccaaataagtcaacaa 30481840  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 30678693 - 30678654
Alignment:
Q  219 aacttaaactctctttttggaatatgagctatcttgtccc 258  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  30678693 aacttaaactgtatttttggaatatgagctatcttgtccc 30678654  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 17419373 - 17419312
Alignment:
Q  198 gtaaacgtctct-gtttcttataacttaaactctctttttggaatatgagctatcttgtccc 258  Q
    |||||||||||| | ||||||  |||| |||| | |||||||||||||||||||||||||||    
T  17419373 gtaaacgtctcttgcttcttaatactttaactttatttttggaatatgagctatcttgtccc 17419312  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 29870580 - 29870609
Alignment:
Q  68 atgatgaagaaaattacctgaattagaaca 97  Q
    ||||||||||||||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaaca 29870609  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 30243822 - 30243793
Alignment:
Q  229 ctctttttggaatatgagctatcttgtccc 258  Q
    ||||||||||||||||||||||||||||||    
T  30243822 ctctttttggaatatgagctatcttgtccc 30243793  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 30678987 - 30678954
Alignment:
Q  67 tatgatgaagaaaattacctgaattagaacaatt 100  Q
    ||||||||||||||||||| ||||||||||||||    
T  30678987 tatgatgaagaaaattaccagaattagaacaatt 30678954  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 30244100 - 30244072
Alignment:
Q  67 tatgatgaagaaaattacctgaattagaa 95  Q
    |||||||||||||||||||||||||||||    
T  30244100 tatgatgaagaaaattacctgaattagaa 30244072  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 30434201 - 30434229
Alignment:
Q  67 tatgatgaagaaaattacctgaattagaa 95  Q
    |||||||||||||||||||||||||||||    
T  30434201 tatgatgaagaaaattacctgaattagaa 30434229  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 30678758 - 30678707
Alignment:
Q  168 atttttgcgatggtgattgtggcagat--agggtaaacgtctctgtttctta 217  Q
    ||||||||||||||||||  |||||||  |||||||||||||||| ||||||    
T  30678758 atttttgcgatggtgattaaggcagataaagggtaaacgtctctgcttctta 30678707  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 30714606 - 30714546
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact 222  Q
    |||||||||||| |||||  | || |||||||| ||||||||||||||| |||||||||||    
T  30714606 aattgatttttgtgatggctaatgaggcagataagggtaaacgtctctgcttcttataact 30714546  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 20298378 - 20298317
Alignment:
Q  98 attttatgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 159  Q
    |||| |||||||||||||||||||||   ||| |||||||||||||||||||| ||| ||||    
T  20298378 atttcatgtactctggatctctttctacagaacgggttccaaagaagtcaacattgagaata 20298317  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 258
Target Start/End: Complemental strand, 20298198 - 20298168
Alignment:
Q  228 tctctttttggaatatgagctatcttgtccc 258  Q
    |||||||||||||||||||||||||||||||    
T  20298198 tctctttttggaatatgagctatcttgtccc 20298168  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 20298434 - 20298405
Alignment:
Q  68 atgatgaagaaaattacctgaattagaaca 97  Q
    ||||||||||||||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaaca 20298405  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 26705848 - 26705892
Alignment:
Q  167 gatttttgcgatggtgattgtggcagat-agggtaaacgtctctg 210  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||    
T  26705848 gatttttgtgatggtgattgaggcagataagggtaaacgtctctg 26705892  T

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