View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_29 (Length: 264)
Name: NF1841_low_29
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_29 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 32924526 - 32924780
Alignment:
| Q |
10 |
attatactgtattataatttttgtttatattttcatcttgtagatattcaagatatatactactaaataaatacatatttttgttttaaataagtcatga |
109 |
Q |
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| T |
32924526 |
attatactgtattataatttttgtttatattttcatcttgtagatattcaagatatatactactaaataaatacatatttttgttttaaataagtcatga |
32924625 |
T |
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| Q |
110 |
aagactgtcttttaactaacatagcagtgaaaacacttgtctcatgtaaaatttatagtaaattgtaatcagtgcataatacacttgaagtactagatta |
209 |
Q |
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| T |
32924626 |
aagactgtcttttaactaacatagcagtgaaaacacttgtctcatgtaaaatttatagtaaattgtaatcagtgcataatacacttgaagtactagatta |
32924725 |
T |
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| Q |
210 |
nnnnnnntgagagattagctttgtaaccttaaggtacaaagaatgatgaaatgaa |
264 |
Q |
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| T |
32924726 |
gggggggtgagagattagctttgtaaccttaaggtacaaagaatgatgaaatgaa |
32924780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 20992943 - 20992990
Alignment:
| Q |
51 |
agatattcaagatatatactactaaataaatacatatttttgttttaa |
98 |
Q |
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| T |
20992943 |
agatattcaatatatatactactaattaaatgcataattttgttttaa |
20992990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 32002851 - 32002929
Alignment:
| Q |
56 |
ttcaagatatatactactaaataaatacatatttttgttttaa--ataagtcatgaaagactgtcttttaactaacata |
132 |
Q |
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||||| ||||| ||||||||||||||||||||| ||||||||| ||| | |||||||| |||||||||||||||| |
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| T |
32002851 |
ttcaaaatatacactactaaataaatacatattcttgttttaactttaacttgtgaaagaccatcttttaactaacata |
32002929 |
T |
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