View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_31 (Length: 259)
Name: NF1841_low_31
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17380260 - 17380031
Alignment:
| Q |
1 |
aatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaatatatgtcttgatttgaaaatcagcttccaatggttcatagtctatatttt |
100 |
Q |
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| T |
17380260 |
aatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaatatatgtcgtgattcgaaaatcagcttccaatggttcatagtctatatttt |
17380161 |
T |
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| Q |
101 |
aaatgctgttagatgagatgaaacacaatctagaacatgataaggatattcccaatgctctatgttgttgagttcttttcttgtcgatcaaagacaaaat |
200 |
Q |
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| T |
17380160 |
aaatgatgttagatgagatgaaacacaatctagaacatgatatggatattcccaatgctctaagttgttgagttcttttcttgtcgatcaaagacaaagt |
17380061 |
T |
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| Q |
201 |
aggatttgtaaaaatactcagaagataaga |
230 |
Q |
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| T |
17380060 |
aggatttgtaaaaatactcagaagataaga |
17380031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 17392745 - 17392578
Alignment:
| Q |
8 |
aatggtcataatctgtaaaagtcacaatcacattctgcaaaatatatgtcttgatttgaaaatcagcttccaatggttcatagtctatatttt-aaatgc |
106 |
Q |
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| T |
17392745 |
aatggtcataacttgtaaaagtc----tcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattt |
17392650 |
T |
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| Q |
107 |
tgttagatgagatgaaacacaatctagaacatgataaggatattcccaatgctctat-gttgttgagttctt |
177 |
Q |
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| T |
17392649 |
tgttagatgagacgaaacacattctggaacatgatctggatattcccaatgctctatggttgttgaattctt |
17392578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 17384009 - 17383826
Alignment:
| Q |
38 |
cattctgcaaaatatatgtcttgatttgaaaatcagcttccaatggttcatagtctatatttt-aaatgctgttagatgagatgaaacacaatctagaac |
136 |
Q |
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| T |
17384009 |
cattctgcaaaatatatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaattttgttagattagacgaaacacattctggaac |
17383910 |
T |
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| Q |
137 |
atgataaggatattcccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactc |
219 |
Q |
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| T |
17383909 |
atgatctggatattcccaatgctctatgcttgctgaattctccgcctgtcaatccgagacaaaataggatatgtaaaaatactc |
17383826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 17377571 - 17377460
Alignment:
| Q |
107 |
tgttagatgagatgaaacacaatctagaacatgataaggatattcccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggat |
205 |
Q |
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| T |
17377571 |
tgttagatgagacgaaacacattctggaacatgatctggatattcccaat---ctatggttgttgaattattcgcctgtcgatccgagacaaaataggat |
17377475 |
T |
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| Q |
206 |
ttgtaaaaatactca |
220 |
Q |
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| T |
17377474 |
ttgtaaaaatactca |
17377460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 26052744 - 26052928
Alignment:
| Q |
38 |
cattctgcaaaatatatgtcttgatttgaaaatcagcttccaatggttcatagtctatatttt-aaatgctgttagatgagatgaaacacaatctagaac |
136 |
Q |
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||||||||||||||||||| || | ||| ||||| ||| | | ||||||||||||| || |||| ||||||||||||||||||||| ||| |||| |
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| T |
26052744 |
cattctgcaaaatatatgttgcgaatcgaatatcagtttcacaagcttcatagtctataacttcaaattttgttagatgagatgaaacacattctggaac |
26052843 |
T |
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| Q |
137 |
atgataaggatattcccaatgctctat-gttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactca |
220 |
Q |
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||||| |||||||||||||||||||| |||||||| | ||| || |||| ||| | ||||||||||||||||||||||||||| |
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| T |
26052844 |
atgatctggatattcccaatgctctatggttgttgaatacttctcctgtcaatccgatacaaaataggatttgtaaaaatactca |
26052928 |
T |
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