View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_32 (Length: 250)
Name: NF1841_low_32
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 1959567 - 1959787
Alignment:
| Q |
13 |
tatactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatc |
112 |
Q |
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| T |
1959567 |
tatactagattggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatc |
1959666 |
T |
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| Q |
113 |
cctataatcttaatcactgctgtcctcttacttgatggaatgctacaaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatc |
212 |
Q |
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| T |
1959667 |
cctataatcttaatcactgctgtcctcttacttgatggaatgctacaaagttatttgaattatattgtatacatgttaaaccacctttgttgtgtgtatc |
1959766 |
T |
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| Q |
213 |
agaaatttccaatcttgaaat |
233 |
Q |
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||||||||||||||||||||| |
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| T |
1959767 |
agaaatttccaatcttgaaat |
1959787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 2023612 - 2023538
Alignment:
| Q |
159 |
aaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaat |
233 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2023612 |
aaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaat |
2023538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 2023944 - 2023807
Alignment:
| Q |
13 |
tatactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatc |
112 |
Q |
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||||||||||| ||| | ||||||||| |||| ||||||||| || | ||||| |||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
2023944 |
tatactagatcagtcaagttgggaatcagtctgccctataatcgggta---catgatgttcacaaggttcttgtagtcctcaagaaaataggtttgtatc |
2023848 |
T |
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| Q |
113 |
cctataatcttaatcactgctgtcctcttacttgatggaat |
153 |
Q |
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|||||||||||||| ||||||||||| |||||||||||| |
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| T |
2023847 |
cctataatcttaattgttgctgtcctctgacttgatggaat |
2023807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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