View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_36 (Length: 247)

Name: NF1841_low_36
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_36
NF1841_low_36
[»] chr7 (18 HSPs)
chr7 (17-164)||(5973559-5973703)
chr7 (16-58)||(47403892-47403934)
chr7 (16-73)||(18046042-18046099)
chr7 (19-59)||(1795452-1795492)
chr7 (16-56)||(19587682-19587722)
chr7 (16-59)||(6607648-6607691)
chr7 (16-59)||(6626525-6626568)
chr7 (20-59)||(21276347-21276386)
chr7 (16-59)||(24000280-24000323)
chr7 (16-59)||(31657746-31657789)
chr7 (16-59)||(31849755-31849798)
chr7 (16-59)||(35193330-35193373)
chr7 (16-59)||(38816249-38816292)
chr7 (16-59)||(41320379-41320422)
chr7 (16-57)||(2765075-2765116)
chr7 (16-57)||(47913479-47913520)
chr7 (17-73)||(44141407-44141463)
chr7 (17-53)||(46972564-46972600)
[»] chr2 (18 HSPs)
chr2 (155-228)||(27657321-27657394)
chr2 (155-237)||(32101366-32101447)
chr2 (155-228)||(21541532-21541605)
chr2 (16-59)||(34826042-34826085)
chr2 (16-65)||(32927716-32927765)
chr2 (163-228)||(38800782-38800847)
chr2 (16-59)||(430877-430920)
chr2 (16-59)||(2098623-2098666)
chr2 (16-59)||(4902956-4902999)
chr2 (16-59)||(9776983-9777026)
chr2 (16-59)||(18707505-18707548)
chr2 (16-59)||(32504339-32504382)
chr2 (16-59)||(32654174-32654217)
chr2 (16-71)||(39060406-39060461)
chr2 (16-59)||(40691642-40691685)
chr2 (155-237)||(15808566-15808648)
chr2 (155-212)||(30768816-30768873)
chr2 (155-212)||(30772979-30773036)
[»] chr8 (11 HSPs)
chr8 (155-228)||(7562278-7562351)
chr8 (155-228)||(24703677-24703750)
chr8 (16-59)||(26695764-26695807)
chr8 (16-59)||(42216614-42216657)
chr8 (16-59)||(7050883-7050926)
chr8 (16-59)||(10837178-10837221)
chr8 (16-59)||(27696708-27696751)
chr8 (16-59)||(30794819-30794862)
chr8 (16-59)||(34181490-34181533)
chr8 (16-59)||(41441426-41441469)
chr8 (16-56)||(9177444-9177484)
[»] chr5 (17 HSPs)
chr5 (155-228)||(32412433-32412506)
chr5 (163-228)||(21790966-21791031)
chr5 (16-59)||(973838-973881)
chr5 (16-59)||(5907272-5907315)
chr5 (16-59)||(9176970-9177013)
chr5 (16-59)||(11062676-11062719)
chr5 (16-59)||(18705535-18705578)
chr5 (17-73)||(974185-974241)
chr5 (16-59)||(20166424-20166467)
chr5 (16-59)||(23592492-23592535)
chr5 (16-59)||(26408649-26408692)
chr5 (16-59)||(27858400-27858443)
chr5 (16-59)||(27858665-27858708)
chr5 (16-59)||(39412477-39412520)
chr5 (16-58)||(25945342-25945384)
chr5 (16-53)||(8619451-8619488)
chr5 (19-59)||(15442980-15443020)
[»] chr6 (11 HSPs)
chr6 (163-228)||(11388303-11388368)
chr6 (16-59)||(5997205-5997248)
chr6 (16-59)||(17203877-17203920)
chr6 (16-61)||(10143221-10143266)
chr6 (16-59)||(2793046-2793089)
chr6 (16-59)||(6389924-6389967)
chr6 (16-59)||(6535738-6535781)
chr6 (16-59)||(9566008-9566051)
chr6 (16-59)||(33360459-33360502)
chr6 (17-59)||(3199319-3199361)
chr6 (41-78)||(12514276-12514313)
[»] scaffold0015 (1 HSPs)
scaffold0015 (16-59)||(49729-49772)
[»] chr3 (11 HSPs)
chr3 (16-59)||(34682291-34682334)
chr3 (16-59)||(47982375-47982418)
chr3 (16-59)||(47991662-47991705)
chr3 (16-59)||(48000949-48000992)
chr3 (16-59)||(48010236-48010279)
chr3 (16-59)||(40037002-40037045)
chr3 (16-59)||(47358162-47358205)
chr3 (16-59)||(51754255-51754298)
chr3 (17-59)||(33092336-33092377)
chr3 (17-59)||(44638623-44638665)
chr3 (17-53)||(16222493-16222529)
[»] chr4 (14 HSPs)
chr4 (16-65)||(32384101-32384150)
chr4 (16-59)||(322004-322047)
chr4 (16-59)||(13198985-13199028)
chr4 (16-59)||(15168925-15168968)
chr4 (16-59)||(16335068-16335111)
chr4 (16-59)||(23205711-23205754)
chr4 (16-59)||(40147363-40147406)
chr4 (16-59)||(42496287-42496330)
chr4 (16-59)||(46008980-46009023)
chr4 (16-59)||(51892675-51892718)
chr4 (16-59)||(52096900-52096943)
chr4 (21-59)||(39210619-39210657)
chr4 (17-59)||(43980134-43980176)
chr4 (17-53)||(45226365-45226401)
[»] scaffold0302 (1 HSPs)
scaffold0302 (16-59)||(14137-14180)
[»] scaffold0170 (1 HSPs)
scaffold0170 (16-59)||(5813-5856)
[»] scaffold0079 (1 HSPs)
scaffold0079 (16-59)||(57749-57792)
[»] scaffold0044 (1 HSPs)
scaffold0044 (16-59)||(9598-9641)
[»] chr1 (10 HSPs)
chr1 (16-59)||(1342444-1342487)
chr1 (16-59)||(1366631-1366674)
chr1 (16-59)||(2930973-2931016)
chr1 (16-59)||(39524281-39524324)
chr1 (16-59)||(45950915-45950958)
chr1 (16-57)||(44396073-44396114)
chr1 (16-65)||(49628133-49628182)
chr1 (16-59)||(5904825-5904869)
chr1 (19-59)||(37351294-37351334)
chr1 (19-59)||(38717691-38717731)
[»] scaffold0385 (1 HSPs)
scaffold0385 (17-53)||(12986-13022)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 5973559 - 5973703
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggaccaatgagatattaaagcctacttttaccttctgcttctcaattttcaattccttttcatctat 116  Q
    |||||||||||||||||| ||||||||||| |||||| ||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  5973559 agggaccaataccaaaatccgatgaaagtggagggacgaatgacatatcaaagcctattttttccttctgcttctcaattttcaattccttttcatctat 5973658  T
Q  117 aacatcattatcaactaaattaaaaaatctacaaattatgtcactaga 164  Q
    ||||||||||||||||||   ||| |||||||||||| ||||||||||    
T  5973659 aacatcattatcaactaa---aaacaatctacaaattttgtcactaga 5973703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 47403934 - 47403892
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatg 58  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  47403934 cagggaccaataccaaaatccgatgaaagtgcagggatcaatg 47403892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 18046099 - 18046042
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatgagatattaaagccta 73  Q
    ||||||||||| |||||||| ||||||||||||||||| ||| | ||||| |||||||    
T  18046099 cagggaccaatgccaaaatttgatgaaagtgcagggactaatcacatatttaagccta 18046042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 1795492 - 1795452
Alignment:
Q  19 ggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  1795492 ggaccaattccaaaatttgatgaaagtgcagggaccaatga 1795452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19587722 - 19587682
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaa 56  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  19587722 cagggaccaatgccaaaattagatgaaagtgcagggaccaa 19587682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 6607691 - 6607648
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  6607691 cagggaccaatgccaaaatcggatgaaagtgcagggaccaatga 6607648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 6626525 - 6626568
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  6626525 cagggaccaatgccaaaatcggatgaaagtgcagggaccaatga 6626568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 21276386 - 21276347
Alignment:
Q  20 gaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  21276386 gaccaatgccaaaatttgatgaaagtgcagggaccaatga 21276347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 24000280 - 24000323
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  24000280 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 24000323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 31657746 - 31657789
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| | |||||| |||||||||||||||||||||||    
T  31657746 cagggaccaatgctaaaatttgatgaaagtgcagggaccaatga 31657789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 31849755 - 31849798
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  31849755 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 31849798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 35193373 - 35193330
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||    
T  35193373 cagggaccaatgccaaaatccgatgaaagtgcagggatcaatga 35193330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 38816292 - 38816249
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  38816292 cagggaccaattccaaaatctgatgaaagtgcagggaccaatga 38816249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 41320422 - 41320379
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  41320422 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 41320379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 2765116 - 2765075
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaat 57  Q
    |||| ||||||||||||||  |||||||||||||||||||||    
T  2765116 caggaaccaataccaaaatctgatgaaagtgcagggaccaat 2765075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 47913479 - 47913520
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaat 57  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  47913479 cagggaccaatgccaaaatctgatgaaagtgcagggaccaat 47913520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 44141463 - 44141407
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggaccaatgagatattaaagccta 73  Q
    |||||||||| |||||||  ||||||||||||||||| || || ||||| |||||||    
T  44141463 agggaccaatgccaaaatctgatgaaagtgcagggactaaagacatatttaagccta 44141407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 46972564 - 46972600
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggac 53  Q
    ||||||||||||||||||| | |||||||||||||||    
T  46972564 agggaccaataccaaaattgggtgaaagtgcagggac 46972600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 27657321 - 27657394
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||||||| ||| ||||| |||| ||||||||||    
T  27657321 tgtcactcgaatttctatagtttctacaaccccaaaatttcttcccacaatttggattcaatgcatcagttaca 27657394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 32101447 - 32101366
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttacaatttgaatt 237  Q
    ||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||| |||||  |||||||||||||||| |||||    
T  32101447 tgtcactcgaatttctataatttctgcaaccccaaa-tttcttcccacaattcagatttgttgtatcagttacaattcgaatt 32101366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 21541605 - 21541532
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||| |||||| |||||||||| |||  ||||||||||||||||| ||| ||||| |||| ||||||||||    
T  21541605 tgtcacttgaatttttatagtttctacaatcccaaaatttcttcccacaatttggattcaatgcatcagttaca 21541532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 34826042 - 34826085
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  34826042 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 34826085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 32927765 - 32927716
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatgagatatt 65  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| |||||    
T  32927765 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatgacatatt 32927716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 38800782 - 38800847
Alignment:
Q  163 gaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||||||||||||| || | ||||||||||||||||| ||| ||||| |||| ||| ||||||    
T  38800782 gaatttctatagtttctacagccccaaaatttcttcccacaatttggattcaatgcatccgttaca 38800847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 430877 - 430920
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  430877 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 430920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 2098623 - 2098666
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  2098623 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 2098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 4902956 - 4902999
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  4902956 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 4902999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9777026 - 9776983
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  9777026 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 9776983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 18707548 - 18707505
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  18707548 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 18707505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 32504339 - 32504382
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  32504339 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 32504382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 32654174 - 32654217
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||| ||||||  |||||||||||||||||||||||    
T  32654174 cagggaccaatatcaaaatctgatgaaagtgcagggaccaatga 32654217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 39060461 - 39060406
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatgagatattaaagcc 71  Q
    |||||||||||||||||||  ||||||||||||||||| || || ||||| |||||    
T  39060461 cagggaccaataccaaaatctgatgaaagtgcagggactaaagacatatttaagcc 39060406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 40691642 - 40691685
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  40691642 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 40691685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 15808648 - 15808566
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttacaatttgaatt 237  Q
    ||||||| ||||| || |||||||| |||| ||| ||||||||||||  |||  |||| |||| |||||||||| ||||||||    
T  15808648 tgtcactcgaattcctgtagtttctacaacaccataatttcttcccaaaattacgattcaatgcatcagttacagtttgaatt 15808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 30768816 - 30768873
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatt 212  Q
    ||||||| ||||||||||||||||| |||| ||| |||||||| |||| ||| |||||    
T  30768816 tgtcactcgaatttctatagtttctacaaccccataatttctttccacaatttggatt 30768873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 30772979 - 30773036
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatt 212  Q
    ||||||| ||||||||||||||||| |||| ||| |||||||| |||| ||| |||||    
T  30772979 tgtcactcgaatttctatagtttctacaaccccataatttctttccacaatttggatt 30773036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 7562351 - 7562278
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||| |||||| |||||||||| |||| ||||||||||||||||| ||| ||||| |||| ||||||||||    
T  7562351 tgtcacttgaatttttatagtttctacaaccccaaaatttcttcccacaatttggattcaatgcatcagttaca 7562278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 24703750 - 24703677
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||| |||||| |||||||||| |||| ||||||||||||||||| ||| ||||| |||| ||||||||||    
T  24703750 tgtcacttgaatttttatagtttctacaaccccaaaatttcttcccacaatttggattcaatgcatcagttaca 24703677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 26695764 - 26695807
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  26695764 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 26695807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 42216614 - 42216657
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  42216614 cagggaccaatgccaaaatccgatgaaagtgcagggaccaatga 42216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 7050883 - 7050926
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  7050883 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 7050926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 10837221 - 10837178
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  10837221 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 10837178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 27696751 - 27696708
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  27696751 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 27696708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 30794862 - 30794819
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  30794862 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 30794819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 34181490 - 34181533
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  34181490 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 34181533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 41441469 - 41441426
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  41441469 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 41441426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 9177444 - 9177484
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaa 56  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  9177444 cagggaccgataccaaaattaggtgaaagtgcagggaccaa 9177484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 32412506 - 32412433
Alignment:
Q  155 tgtcactagaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||| |||||| |||||||||| |||| ||||||||||||||||| ||| ||||| |||| ||||||||||    
T  32412506 tgtcacttgaatttttatagtttctacaaccccaaaatttcttcccacaatttggattcaatgcatcagttaca 32412433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 21791031 - 21790966
Alignment:
Q  163 gaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||||||||||||| || | ||||||||||||||||| ||| ||||| |||| ||||||||||    
T  21791031 gaatttctatagtttctacagccccaaaatttcttcccacaatttggattcaatgaatcagttaca 21790966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 973881 - 973838
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  973881 cagggaccaatgccaaaatttgatgaaagtgcagggaccaatga 973838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5907315 - 5907272
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  5907315 cagggaccaatgccaaaatttgatgaaagtgcagggaccaatga 5907272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9177013 - 9176970
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  9177013 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 9176970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 11062676 - 11062719
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  11062676 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 11062719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 18705578 - 18705535
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  18705578 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 18705535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 974185 - 974241
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggaccaatgagatattaaagccta 73  Q
    ||||||||||||||||||  ||||||||||||||||| || || ||||| |||||||    
T  974185 agggaccaataccaaaatctgatgaaagtgcagggactaaagacatatttaagccta 974241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 20166424 - 20166467
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  20166424 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 20166467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23592535 - 23592492
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||| ||||||  |||||||||||||||||||||||    
T  23592535 cagggaccaatatcaaaatctgatgaaagtgcagggaccaatga 23592492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 26408692 - 26408649
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  26408692 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 26408649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 27858443 - 27858400
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  27858443 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 27858400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 27858665 - 27858708
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  ||||||| |||||||||||||||    
T  27858665 cagggaccaataccaaaatctgatgaaaatgcagggaccaatga 27858708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 39412477 - 39412520
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  39412477 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 39412520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 25945384 - 25945342
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatg 58  Q
    ||||||||||| |||||||  ||||||||||||||||||||||    
T  25945384 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatg 25945342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8619451 - 8619488
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggac 53  Q
    |||||||||||||||||||| | |||||||||||||||    
T  8619451 cagggaccaataccaaaattgggtgaaagtgcagggac 8619488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 15442980 - 15443020
Alignment:
Q  19 ggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  15442980 ggaccaatgccaaaatctgatgaaagtgcagggaccaatga 15443020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 11388303 - 11388368
Alignment:
Q  163 gaatttctatagtttctgcaactccaaaatttcttcccactattcggatttaatgtatcagttaca 228  Q
    ||||||||||||||||| || | ||||||||||||||||| ||| ||||| |||| ||||||||||    
T  11388303 gaatttctatagtttctacagccccaaaatttcttcccacaatttggattcaatgaatcagttaca 11388368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5997248 - 5997205
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  5997248 cagggaccaatgccaaaatttgatgaaagtgcagggaccaatga 5997205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 17203920 - 17203877
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  17203920 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 17203877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 10143266 - 10143221
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatgaga 61  Q
    ||||||||||| |||||||  |||||||||||||||||||||||||    
T  10143266 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatgaga 10143221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 2793089 - 2793046
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  2793089 cagggaccaatgccaaaatatgatgaaagtgcagggaccaatga 2793046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 6389967 - 6389924
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||| ||||||  |||||||||||||||||||||||    
T  6389967 cagggaccaatatcaaaatctgatgaaagtgcagggaccaatga 6389924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 6535738 - 6535781
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  6535738 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 6535781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9566051 - 9566008
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  9566051 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 9566008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 33360502 - 33360459
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  33360502 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 33360459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 3199361 - 3199319
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||| |||||||  |||||||||||||||||||||||    
T  3199361 agggaccaatgccaaaatctgatgaaagtgcagggaccaatga 3199319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 12514276 - 12514313
Alignment:
Q  41 aaagtgcagggaccaatgagatattaaagcctactttt 78  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  12514276 aaagtgcagggaccaatgacacattaaagcctactttt 12514313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 49772 - 49729
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  49772 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 49729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 34682334 - 34682291
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  34682334 cagggaccaataccaaaatctgatgaaagtgcagggaccaatga 34682291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 47982418 - 47982375
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  47982418 cagggatcaataccaaaatttgatgaaagtgcagggaccaatga 47982375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 47991705 - 47991662
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  47991705 cagggatcaataccaaaatttgatgaaagtgcagggaccaatga 47991662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 48000992 - 48000949
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  48000992 cagggatcaataccaaaatttgatgaaagtgcagggaccaatga 48000949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 48010279 - 48010236
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  48010279 cagggatcaataccaaaatttgatgaaagtgcagggaccaatga 48010236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 40037002 - 40037045
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  40037002 cagggaccaatgccaaaatttgatgaaaatgcagggaccaatga 40037045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 47358205 - 47358162
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  47358205 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 47358162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 51754255 - 51754298
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  51754255 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 51754298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 33092336 - 33092377
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  33092336 agggaccaataccaaattt-gatgaaagtgcagggaccaatga 33092377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 44638623 - 44638665
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||| |||||||  |||||||||||||||||||||||    
T  44638623 agggaccaatgccaaaatctgatgaaagtgcagggaccaatga 44638665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 16222529 - 16222493
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggac 53  Q
    |||||||||| |||||||| |||||||||||||||||    
T  16222529 agggaccaatgccaaaatttgatgaaagtgcagggac 16222493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 32384150 - 32384101
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatgagatatt 65  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| |||||    
T  32384150 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatgacatatt 32384101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 322004 - 322047
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  322004 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 322047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 13199028 - 13198985
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  13199028 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 13198985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 15168968 - 15168925
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  15168968 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 15168925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 16335111 - 16335068
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  16335111 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 16335068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23205754 - 23205711
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  23205754 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 23205711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 40147406 - 40147363
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  40147406 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 40147363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 42496287 - 42496330
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  42496287 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 42496330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 46008980 - 46009023
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  46008980 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 46009023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 51892718 - 51892675
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  51892718 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 51892675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 52096900 - 52096943
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||| ||||||||||||||  |||||||||||||||||||||||    
T  52096900 caggaaccaataccaaaatctgatgaaagtgcagggaccaatga 52096943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 39210619 - 39210657
Alignment:
Q  21 accaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  39210619 accaatgccaaaatttgatgaaagtgcagggaccaatga 39210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 43980134 - 43980176
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||||| |||||||  |||||||||||||||||||||||    
T  43980134 agggaccaatgccaaaatctgatgaaagtgcagggaccaatga 43980176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 45226365 - 45226401
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggac 53  Q
    |||||||||| |||||||| |||||||||||||||||    
T  45226365 agggaccaatgccaaaatttgatgaaagtgcagggac 45226401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14180 - 14137
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  14180 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 14137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 5813 - 5856
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  5813 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 5856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 57749 - 57792
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  57749 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 57792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9641 - 9598
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  9641 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 9598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 1342487 - 1342444
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  1342487 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 1342444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 1366631 - 1366674
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  1366631 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 1366674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 2931016 - 2930973
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  2931016 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 2930973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39524324 - 39524281
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  39524324 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 39524281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 45950958 - 45950915
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  45950958 cagggaccaatgccaaaatctgatgaaagtgcagggaccaatga 45950915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 44396114 - 44396073
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaat 57  Q
    |||||||||||| ||||||  |||||||||||||||||||||    
T  44396114 cagggaccaatatcaaaatctgatgaaagtgcagggaccaat 44396073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 49628182 - 49628133
Alignment:
Q  16 cagggaccaataccaaaattcgatgaaagtgcagggaccaatgagatatt 65  Q
    ||||||| ||| |||||||  ||||||||||||||||||||||| |||||    
T  49628182 cagggactaatgccaaaatctgatgaaagtgcagggaccaatgacatatt 49628133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5904869 - 5904825
Alignment:
Q  16 cagggaccaataccaaaattc-gatgaaagtgcagggaccaatga 59  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||    
T  5904869 cagggaccaatgccaaaattctgataaaagtgcagggaccaatga 5904825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 37351294 - 37351334
Alignment:
Q  19 ggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  37351294 ggaccaatgccaaaatctgatgaaagtgcagggaccaatga 37351334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 38717691 - 38717731
Alignment:
Q  19 ggaccaataccaaaattcgatgaaagtgcagggaccaatga 59  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  38717691 ggaccaatgccaaaatctgatgaaagtgcagggaccaatga 38717731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 13022 - 12986
Alignment:
Q  17 agggaccaataccaaaattcgatgaaagtgcagggac 53  Q
    |||||||||| |||||||| |||||||||||||||||    
T  13022 agggaccaatgccaaaatttgatgaaagtgcagggac 12986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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