View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1841_low_4 (Length: 592)
Name: NF1841_low_4
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 299 - 573
Target Start/End: Original strand, 3553473 - 3553747
Alignment:
| Q |
299 |
atgttgttcagagccttgactgttaacttgatcctgcagagctctgtcttcatatccgtgtttgacttcagatcagactttgacttcataacttgatgta |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3553473 |
atgttgttcagagccttgactattaacttgatcctgcagagctctgtcttcagatccgtgtttgacttcagatcagagtttgacttcataacttgatgta |
3553572 |
T |
|
| Q |
399 |
aatttggtaaaagatttaaccttttgttgatcatcttcaaatcagagctttgtcacaagaggctttgtcttggatccagcactataacgatgatgttaat |
498 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3553573 |
aatttggtaaaagatttaaccttttgtcgatcatcttcaaatcagagctttgtcacaagaggctttgtcttggatccagcactataacgatgatgttaat |
3553672 |
T |
|
| Q |
499 |
aatagagtagtatttggagttgagtaatagggatctagatgtggtgtagtatttggagtttcttggagtgatttt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3553673 |
aatagagtagtatttggagttgagtaatagggatctagatgtggtgtagtatttggagtttcttggagtgatttt |
3553747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 3545891 - 3546191
Alignment:
| Q |
1 |
ataatatggtgattatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgttaaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3545891 |
ataatatggtgattatataaaaaacaattacattggtaaacttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgttaaatat |
3545990 |
T |
|
| Q |
101 |
gcaaaaatccgttaaatatgtttcaccacgcccgttgcaaatattccgttcttatatatgtggatgcaaattttatgtatcgatataattatatatagac |
200 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
3545991 |
gccaaaatccgttaaatatg-ttcaccacgcccgttgcaaatattccgtgcttatatatgtggatgcaaattttatgtatcgatataattgtatacagat |
3546089 |
T |
|
| Q |
201 |
tttcaatcaaatttca-nnnnnnnnnnnnnaaatatcaacatgtggttgttagatcatgatcgtaattaatattggatannnnnnnaagggagtattgaa |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3546090 |
tttcaatcaaatttcatatttattttttttaaatatcaacatgtggttgttagatcatgatcgtaattaatattggatatttttttaagggagtattgaa |
3546189 |
T |
|
| Q |
300 |
tg |
301 |
Q |
| |
|
|| |
|
|
| T |
3546190 |
tg |
3546191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 24864999 - 24865081
Alignment:
| Q |
12 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
94 |
Q |
| |
|
||||||||||||| ||||| ||| |||| ||||| |||||||||| || || ||| ||||||||||| | | |||||||||| |
|
|
| T |
24864999 |
attatataaaaaataattaaatttttaatattgttgaatgtttaaaaatattaaataaaaattatcagaattaatgtaatgtt |
24865081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 3421404 - 3421331
Alignment:
| Q |
21 |
aaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
94 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||| | || ||| |||||||||| || | |||||||||| |
|
|
| T |
3421404 |
aaaacaattacattgctaatattgtgaaatgtttaaaggtattaaataaaaattatcaacattaatgtaatgtt |
3421331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 21118615 - 21118553
Alignment:
| Q |
16 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
78 |
Q |
| |
|
||||||||| |||||||||| |||| |||| ||||||||||| || || ||| |||||||||| |
|
|
| T |
21118615 |
tataaaaaataattacattgttaatattgtcaaatgtttaaaaatattaaataaaaattatca |
21118553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 494269 - 494332
Alignment:
| Q |
15 |
atataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
78 |
Q |
| |
|
|||||||||| |||| ||||| |||| |||| |||||||||||||| || ||| |||||||||| |
|
|
| T |
494269 |
atataaaaaataatttcattgttaatattgtcaaatgtttaaagatattaaatgaaaattatca |
494332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 7183890 - 7183937
Alignment:
| Q |
12 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaaga |
59 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
7183890 |
attatataaaaaacaattacattagtaatattgtgaaatatttaaaga |
7183937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 453
Target Start/End: Original strand, 10252634 - 10252728
Alignment:
| Q |
359 |
tttgacttcagatcagactttgacttcataacttgatgtaaatttggtaaaagatttaaccttttgttgatcatcttcaaatcagagctttgtca |
453 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||| | | ||| | | || ||| || ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
10252634 |
tttgccttcagatcagagcttgttttcataacttgatgcacacttgattagagctttgactttttgttcatcatcttcagatcagagctttgtca |
10252728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 3927664 - 3927602
Alignment:
| Q |
16 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
78 |
Q |
| |
|
||||||||||||||| |||| |||| |||| ||||||||||| ||||| ||| || ||||||| |
|
|
| T |
3927664 |
tataaaaaacaattatattgataatattgtgaaatgtttaaaaatgttaaataaatattatca |
3927602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University