View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_40 (Length: 235)

Name: NF1841_low_40
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_40
NF1841_low_40
[»] chr5 (3 HSPs)
chr5 (1-221)||(14538837-14539057)
chr5 (11-121)||(41870630-41870740)
chr5 (105-143)||(7137215-7137253)
[»] chr3 (8 HSPs)
chr3 (11-207)||(15488584-15488780)
chr3 (11-207)||(31516609-31516805)
chr3 (11-121)||(1418924-1419034)
chr3 (11-121)||(30378133-30378243)
chr3 (11-193)||(53630914-53631096)
chr3 (93-207)||(15495414-15495529)
chr3 (49-207)||(36598561-36598719)
chr3 (77-127)||(53875730-53875780)
[»] chr4 (6 HSPs)
chr4 (11-191)||(4458816-4458996)
chr4 (47-168)||(4459614-4459735)
chr4 (85-204)||(18541898-18542016)
chr4 (74-128)||(36102945-36102999)
chr4 (11-128)||(6831169-6831286)
chr4 (15-127)||(37211429-37211540)
[»] chr7 (3 HSPs)
chr7 (11-123)||(12380490-12380602)
chr7 (11-121)||(15679028-15679138)
chr7 (84-163)||(23100616-23100695)
[»] chr2 (3 HSPs)
chr2 (11-121)||(18581680-18581790)
chr2 (11-121)||(38698021-38698131)
chr2 (19-128)||(5276019-5276127)
[»] chr1 (7 HSPs)
chr1 (11-121)||(9957844-9957954)
chr1 (11-121)||(32177888-32177998)
chr1 (93-204)||(10644714-10644824)
chr1 (74-156)||(31461341-31461423)
chr1 (76-186)||(31472883-31472993)
chr1 (18-115)||(35501108-35501205)
chr1 (90-127)||(8360519-8360556)
[»] chr6 (2 HSPs)
chr6 (74-201)||(31278545-31278676)
chr6 (91-127)||(2638697-2638733)
[»] chr8 (2 HSPs)
chr8 (98-192)||(42268804-42268898)
chr8 (18-68)||(17635253-17635303)
[»] scaffold0552 (1 HSPs)
scaffold0552 (11-128)||(10671-10788)
[»] scaffold0103 (1 HSPs)
scaffold0103 (91-127)||(1276-1312)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14539057 - 14538837
Alignment:
Q  1 aaaatattcacattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttg 100  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  14539057 aaaatattcacattgggaaaactaagatttatttttctaataggttccttttcaaccagaatatctctcgacatgttatcaacattctttcaatttcttg 14538958  T
Q  101 gatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatgtatttttc 200  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538957 gatcatacatatcaaaatgagaaatttcaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatgtatttttc 14538858  T
Q  201 cgattttaggtttttgtttct 221  Q
    ||||||||||||| |||||||    
T  14538857 cgattttaggtttgtgtttct 14538837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 41870740 - 41870630
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| ||||| ||||||| |||||||||||||    
T  41870740 cattgggaaaattaagattcatttctcgaataggtcccttttcaactagaatatcccttgaggtgttatcaaaattctcccaatttgttggatcataaat 41870641  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  41870640 atcaaaatgag 41870630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 7137215 - 7137253
Alignment:
Q  105 ataaatatcaaaatgagaaattttaatattagatgcatt 143  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  7137215 ataaatatcaaaatgagtaatttcaatattagatgcatt 7137253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 15488584 - 15488780
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    ||||| |||||||||||||||||| | | ||||| || |||||||| | |||||||||  |  ||||||||| ||||| ||||||||| |||||||||||    
T  15488584 cattgagaaaattaagattcatttctatgataggcccattttcaactaaaatatctcttgatgtgttatcaagattctcccaatttctcggatcataaat 15488683  T
Q  111 atcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatgtatttttccgatttt 207  Q
    ||||||||||| ||||| ||||||||||||||||    ||||||||||||||| | ||  ||||||| || |||| |||||| ||||||||||||||    
T  15488684 atcaaaatgaggaatttcaatattagatgcatttaacacatcatcaccaagattgcagacgaaggatttggcaccattgatgcatttttccgatttt 15488780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 31516609 - 31516805
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    ||||| |||||||||||||||||||  ||||||  |  |||||||| |||||||||||  |  ||||||||| ||||| | |||||||||||||||||||    
T  31516609 cattgagaaaattaagattcattttaataatagacctattttcaactagaatatctcttgatttgttatcaagattctccgaatttcttggatcataaat 31516708  T
Q  111 atcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatgtatttttccgatttt 207  Q
    || |||||||| ||||||||||| ||||||||||||  |||| ||| |||||| ||||  |||| || ||| || |||||||| ||||||| |||||    
T  31516709 attaaaatgagcaattttaatatcagatgcatttggcacatcgtcatcaagattggagacgaagaatttgatactcttgatgtgtttttccaatttt 31516805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 1418924 - 1419034
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| ||||| ||||||| |||||||||||||    
T  1418924 cattgggaaaattaagattcatttctcgaataggtcccttttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaat 1419023  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  1419024 atcaaaatgag 1419034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 30378243 - 30378133
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| ||||| ||||||| |||||||||||||    
T  30378243 cattgggaaaattaagattcatttctcgaataggtcccttttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaat 30378144  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  30378143 atcaaaatgag 30378133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 53630914 - 53631096
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||| ||||||||||||||||||| | || |||     |||||||| ||||||||| |  || | ||||| | ||||| ||||||| ||||||||||| |    
T  53630914 cattaggaaaattaagattcatttctttagtagacttattttcaactagaatatcttttgacgtcttatctaaattctcccaattttttggatcataact 53631013  T
Q  111 atcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatgt 193  Q
    ||| ||||||| ||||| ||||||||||||||||||| |||||||| | |||||||||   |||||| |  ||||||||||||    
T  53631014 atctaaatgagcaatttcaatattagatgcatttggtacatcatcatcgagataggagacaaaggatttcgcacccttgatgt 53631096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 15495414 - 15495529
Alignment:
Q  93 atttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatg 192  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||| || | ||  ||||||| |||||| |||| ||    
T  15495414 atttctcggatcataaatatcaaaacgagaaatttaaatattagatgcatttggcacatcatcaccaatattgtagacgaaggatttgacactcttgctg 15495513  T
Q  193 ta-tttttccgatttt 207  Q
     | |||||||||||||    
T  15495514 cattttttccgatttt 15495529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 36598719 - 36598561
Alignment:
Q  49 ttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtc 148  Q
    |||||||| ||||||| |||  | | ||||| || ||||| | ||||||||| |||||||||||  ||||||| ||||| ||||||||||| ||||| |     
T  36598719 ttttcaactagaatatatcttgatacgttattaaaattctccaaatttcttgtatcataaatatttaaatgagcaatttcaatattagatgtatttgata 36598620  T
Q  149 catcatcaccaagataggaggggaaggatctgacacccttgatgtatttttccgatttt 207  Q
    ||||||||||||||| ||||  |||| ||  | |||| ||||||| |||||| ||||||    
T  36598619 catcatcaccaagattggagacgaagaattggtcaccattgatgtgtttttctgatttt 36598561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 53875780 - 53875730
Alignment:
Q  77 tatcaacattcttccaatttcttggatcataaatatcaaaatgagaaattt 127  Q
    |||||| |||||  |||||||||||||||||| ||||||||||| ||||||    
T  53875780 tatcaatattctctcaatttcttggatcataattatcaaaatgaaaaattt 53875730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 4458996 - 4458816
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| |||| ||||||  |||||||| ||||||||  |  || ||||||| | ||||| |||||||| || |||||||||    
T  4458996 cattgggaaaattaagattcatttctctagtaggtcatttttcaactagaatatcctttgacgtgttatcgagattctcccaatttcatgaatcataaat 4458897  T
Q  111 atcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgat 191  Q
    |||||| |||| ||||| |||||| |||||||||||  ||||||| |||||||| |||  ||||||| || ||||||||||    
T  4458896 atcaaattgagcaatttcaatattggatgcatttggcacatcatcgccaagatatgagacgaaggatttggcacccttgat 4458816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 4459614 - 4459735
Alignment:
Q  47 ccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttgg 146  Q
    |||||||||| |||||||| ||  | ||||| |||| ||||| |||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  4459614 ccttttcaactagaatatcccttgatatgttctcaagattctcccaatttcatggatcatatatatcaaaatgagcaatttcaatattagatgcatttgg 4459713  T
Q  147 tccatcatcaccaagataggag 168  Q
      ||||||||| ||||||||||    
T  4459714 cacatcatcactaagataggag 4459735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 18541898 - 18542016
Alignment:
Q  85 ttcttccaatttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacac 184  Q
    |||||||||||||||||||||||||||| ||||||||  |||| ||||||||||| ||||||  ||||||||||||||| ||||  ||||||| || |||    
T  18541898 ttcttccaatttcttggatcataaatattaaaatgagctatttcaatattagatg-atttggcacatcatcaccaagattggagatgaaggatttggcac 18541996  T
Q  185 ccttgatgtatttttccgat 204  Q
    ||||||||| ||||| ||||    
T  18541997 ccttgatgtcttttttcgat 18542016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 36102999 - 36102945
Alignment:
Q  74 tgttatcaacattcttccaatttcttggatcataaatatcaaaatgagaaatttt 128  Q
    |||||| || |||||  |||||||||| |||||||||||||||||||||||||||    
T  36102999 tgttattaagattctctcaatttcttgaatcataaatatcaaaatgagaaatttt 36102945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 6831169 - 6831286
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||| |||||||||||| |||||| |||| |||  ||| ||||||| | ||||||  |  |  |||| |||| ||||| |||||| ||||||| ||||||    
T  6831169 catttggaaaattaagaatcatttctctagtagaccccctttcaactataatatccttttatttgttttcaagattctcccaattccttggattataaat 6831268  T
Q  111 atcaaaatgagaaatttt 128  Q
    ||||||||||| ||||||    
T  6831269 atcaaaatgaggaatttt 6831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 37211540 - 37211429
Alignment:
Q  15 gggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaatatca 114  Q
    |||||| ||||||||||||| ||| |||| ||||||| |||| | ||||||  |  |  ||||||||| ||||| ||||||||  ||||||||| |||||    
T  37211540 gggaaagttaagattcatttctctgatagatcccttt-caactaaaatatcatttgatttgttatcaagattctcccaatttcacggatcataagtatca 37211442  T
Q  115 aaatgagaaattt 127  Q
     ||||||||||||    
T  37211441 gaatgagaaattt 37211429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 12380602 - 12380490
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| ||||| ||||||| |||||||||||||    
T  12380602 cattgggaaaattaagattcatttctcgaataggtcccttttcaacaagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaat 12380503  T
Q  111 atcaaaatgagaa 123  Q
    |||||||||||||    
T  12380502 atcaaaatgagaa 12380490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 15679028 - 15679138
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||| ||| ||||||| |||||||| ||  |  ||||||||| ||||||||||||| |||||||||||||    
T  15679028 cattgggaaaattaagattcatttctcgaataggccccctttcaactagaatatcccttgaggtgttatcaagattcttccaatttgttggatcataaat 15679127  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  15679128 atcaaaatgag 15679138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 23100616 - 23100695
Alignment:
Q  84 attcttccaatttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagat 163  Q
    ||||| |||||||||  |||||||||||||||| |||| ||||| ||||| | ||||||||||   ||||||| ||||||    
T  23100616 attctcccaatttctaagatcataaatatcaaattgaggaatttcaatatcatatgcatttggaaaatcatcatcaagat 23100695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 18581680 - 18581790
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| ||||| ||||||| |||||||||||||    
T  18581680 cattgggaaaattaagattcatttctcgaataggtcccttttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaat 18581779  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  18581780 atcaaaatgag 18581790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 38698131 - 38698021
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| ||||| ||||||| |||||||||||||    
T  38698131 cattgggaaaattaagattcatttctcgaataggtcccttttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaat 38698032  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  38698031 atcaaaatgag 38698021  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 5276127 - 5276019
Alignment:
Q  19 aaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaatatcaaaat 118  Q
    |||||||||||||||| |||| ||||   ||||||||| ||||||||  | ||  ||||||||| ||||| ||||||| ||||||| |||||||||||||    
T  5276127 aaattaagattcatttatctagtaggcaacttttcaactagaatatcctttaaattgttatcaagattctcccaattt-ttggatcttaaatatcaaaat 5276029  T
Q  119 gagaaatttt 128  Q
    |||| |||||    
T  5276028 gagagatttt 5276019  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 9957954 - 9957844
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| ||||| ||||||| |||||||||||||    
T  9957954 cattgggaaaattaagattcatttctcgaataggtcccttttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaat 9957855  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  9957854 atcaaaatgag 9957844  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 32177888 - 32177998
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||  |  ||||||||| |||||  |||||| |||||||||||||    
T  32177888 cattgggaaaattaagattcatttctcgaataggtcccttttcaactagaatatcccttgaggtgttatcaagattctctcaatttgttggatcataaat 32177987  T
Q  111 atcaaaatgag 121  Q
    |||||||||||    
T  32177988 atcaaaatgag 32177998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 10644714 - 10644824
Alignment:
Q  93 atttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatg 192  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||   ||| || || |||||||||||    
T  10644714 atttcttggatcataaatattaaaatgagcaatttcaatattagatgcatttgg-ccatcatcaccaagattggagacaaagaatttggcacccttgatg 10644812  T
Q  193 tatttttccgat 204  Q
    | ||||||||||    
T  10644813 tgtttttccgat 10644824  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 31461341 - 31461423
Alignment:
Q  74 tgttatcaacattcttccaatttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatca 156  Q
    ||||||||| ||||| | ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||||    
T  31461341 tgttatcaaaattctccaaatttctcggatcataaatattaaaatgagcaattttaatattagatgcatttggcacatcatca 31461423  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 31472883 - 31472993
Alignment:
Q  76 ttatcaacattcttccaatttcttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaagg 175  Q
    ||||||| ||||| | ||||| | ||||| ||||||| |||||||| ||||| |||||| ||| | |||||  ||||||||||||||| ||||  |||||    
T  31472883 ttatcaaaattctccaaatttgtcggatcttaaatattaaaatgagcaatttcaatatttgatacctttggcacatcatcaccaagattggagacgaagg 31472982  T
Q  176 atctgacaccc 186  Q
    || ||||||||    
T  31472983 atttgacaccc 31472993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 35501108 - 35501205
Alignment:
Q  18 aaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaatatcaa 115  Q
    ||||||| |||| ||||||||| |||| |  |||| ||| |||||||| ||  || |||| |||| ||||||||||||| ||||||||| ||||||||    
T  35501108 aaaattaggattaatttttctagtaggcctatttttaactagaatatcacttgacgtgttgtcaagattcttccaatttattggatcatgaatatcaa 35501205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 8360556 - 8360519
Alignment:
Q  90 ccaatttcttggatcataaatatcaaaatgagaaattt 127  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  8360556 ccaatttcttgtatcataaatatcacaatgagaaattt 8360519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 31278676 - 31278545
Alignment:
Q  74 tgttatcaacattcttccaatttcttggatcataaatatcaaaatgagaaattttaatattagatgcattt----ggtccatcatcaccaagataggagg 169  Q
    ||||||||| ||||| | ||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||    ||  |||||||||||||||| |||     
T  31278676 tgttatcaagattctccaaatttcttgaatcataaatattaaaatgagcaatttcaatattagatgcatttaattggcacatcatcaccaagatatgaga 31278577  T
Q  170 ggaaggatctgacacccttgatgtatttttcc 201  Q
     ||||||| || ||||||| |||| |||||||    
T  31278576 cgaaggatttggcacccttaatgtgtttttcc 31278545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 2638697 - 2638733
Alignment:
Q  91 caatttcttggatcataaatatcaaaatgagaaattt 127  Q
    |||||||||| |||||||||||||||||||| |||||    
T  2638697 caatttcttgtatcataaatatcaaaatgaggaattt 2638733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 42268898 - 42268804
Alignment:
Q  98 ttggatcataaatatcaaaatgagaaattttaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatg 192  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||   ||||||||| |||||| |||  ||||||| || ||| |||||||    
T  42268898 ttggatcataaatatcaaaacgataaatttcaatattagatgcatttgacacatcatcactaagatatgagacgaaggatttggcactcttgatg 42268804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 17635253 - 17635303
Alignment:
Q  18 aaaattaagattcatttttctaataggtcccttttcaaccagaatatctct 68  Q
    ||||||||||||||||| |||| ||||||| |||||||| |||||||||||    
T  17635253 aaaattaagattcatttctctagtaggtccattttcaactagaatatctct 17635303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 10671 - 10788
Alignment:
Q  11 cattgggaaaattaagattcatttttctaataggtcccttttcaaccagaatatctctcaacatgttatcaacattcttccaatttcttggatcataaat 110  Q
    |||| |||||||||||| |||||| |||| |||  ||| ||||||| | ||||||  |  |  |||| |||| ||||| |||||| ||||||| ||||||    
T  10671 catttggaaaattaagaatcatttctctagtagaccccctttcaactataatatccttttatttgttttcaagattctcccaattccttggattataaat 10770  T
Q  111 atcaaaatgagaaatttt 128  Q
    ||||||||||| ||||||    
T  10771 atcaaaatgaggaatttt 10788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 1312 - 1276
Alignment:
Q  91 caatttcttggatcataaatatcaaaatgagaaattt 127  Q
    |||||||||| |||||||||||||||||||| |||||    
T  1312 caatttcttgtatcataaatatcaaaatgaggaattt 1276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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