View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_41 (Length: 224)
Name: NF1841_low_41
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 55983096 - 55982890
Alignment:
| Q |
1 |
gcactcacgattggtcttgcaaatatcaaaacagaagagaagaaagaagggaaaagtaattcaattttctgttctgatgaagtagtctgaactcagctgg |
100 |
Q |
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| T |
55983096 |
gcactcacgattggtcttgcaaataccaaaacagaagagaagaaagaagggaaaagtaattcaattttctgttctgatgaagtagtctgaactcagctgg |
55982997 |
T |
|
| Q |
101 |
tgtgctaatttctaatgtgtannnnnnncattagctgattaaattgttagcctagtgtattgaagattaatatttcaatataaatcttgccaccttggtc |
200 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55982996 |
tgtgctaatttctaatgtgtattttttacattagctaattaaattgttagcctagtgtattgaagattaatatttcaatataaatcttgccaccttggtc |
55982897 |
T |
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| Q |
201 |
ttgggct |
207 |
Q |
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||||||| |
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| T |
55982896 |
ttgggct |
55982890 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 6297552 - 6297503
Alignment:
| Q |
72 |
ttctgatgaagtagtctgaactcagctggtgtgctaatttctaatgtgta |
121 |
Q |
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||||||||||||||||||||| |||||||||||| |||| |||| |||| |
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| T |
6297552 |
ttctgatgaagtagtctgaacagagctggtgtgctgatttgtaatatgta |
6297503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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