View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1841_low_44 (Length: 201)

Name: NF1841_low_44
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1841_low_44
NF1841_low_44
[»] chr5 (4 HSPs)
chr5 (18-148)||(43153122-43153252)
chr5 (97-164)||(19204620-19204687)
chr5 (144-183)||(43152905-43152944)
chr5 (99-148)||(3748420-3748469)
[»] chr6 (1 HSPs)
chr6 (22-165)||(3606279-3606421)
[»] chr3 (4 HSPs)
chr3 (25-159)||(52736143-52736278)
chr3 (29-149)||(53567405-53567526)
chr3 (97-164)||(33989681-33989748)
chr3 (99-157)||(42643795-42643853)
[»] chr1 (1 HSPs)
chr1 (97-164)||(7765903-7765970)
[»] chr7 (3 HSPs)
chr7 (38-164)||(4227883-4228009)
chr7 (97-159)||(38493745-38493807)
chr7 (98-159)||(45822467-45822528)
[»] chr2 (1 HSPs)
chr2 (38-164)||(42771217-42771343)
[»] chr4 (3 HSPs)
chr4 (100-157)||(1594090-1594147)
chr4 (23-71)||(5834501-5834549)
chr4 (96-159)||(20231506-20231569)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 43153252 - 43153122
Alignment:
Q  18 tcctcaaaatcgattcttggagaagctgctctccctaacttcttggaatcgagtttatcaaaagcagaagtacatataaccatttgtctcttttaccctt 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43153252 tcctcaaaatcgattcttggagaagctgctctccctagcttcttggaatcgagtttatcaaaagcagaagtacatataaccatttgtctcttttaccctt 43153153  T
Q  118 gaatcttattacttcctttcacatacctttt 148  Q
    |||||||||||||||||||||||||||||||    
T  43153152 gaatcttattacttcctttcacatacctttt 43153122  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 19204687 - 19204620
Alignment:
Q  97 ccatttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttgacatatcc 164  Q
    ||||||||||||||||||||||||||| || |||| |||||||||| ||||||| |||||||| ||||    
T  19204687 ccatttgtctcttttacccttgaatctcatcactttctttcacatatctttttaaatttgacaaatcc 19204620  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 43152944 - 43152905
Alignment:
Q  144 ctttttatatttgacatatccaaatatgttactccttctc 183  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43152944 ctttttatatttgacatatccaaatatgttactccttctc 43152905  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 3748420 - 3748469
Alignment:
Q  99 atttgtctcttttacccttgaatcttattacttcctttcacatacctttt 148  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||||||||    
T  3748420 atttgtctcttttgcccttgaatctcaacacttcctttcacatacctttt 3748469  T

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Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 3606421 - 3606279
Alignment:
Q  22 caaaatcgattcttggagaagctgctctccctaacttcttggaatcgagtttatcaaaagcagaagtacatataaccatttgtctcttttacccttgaat 121  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| || |||| || |   ||||||| |  ||||||||||||||||||||||||||    
T  3606421 caaaatcgattcttggagaagctgctctccctagcttcttgaaatcgtgtctatccaacgtgaaagtacacaacaccatttgtctcttttacccttgaat 3606322  T
Q  122 cttattacttcctttcacatacctttttatatttgacatatcca 165  Q
    ||| | ||||||||||||||||| |||||||||||||| |||||    
T  3606321 cttgtcacttcctttcacatacc-ttttatatttgacagatcca 3606279  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 52736143 - 52736278
Alignment:
Q  25 aatcgattcttggagaagctgctctccctaacttcttggaatcgagtttatcaaaagcagaagtacatataa-ccatttgtctcttttacccttgaatct 123  Q
    |||||||| ||  ||||||||||||| ||| ||||||| |||||| | | || |  |||||||||||||| | ||| ||||||||||||||| |||||||    
T  52736143 aatcgatttttaaagaagctgctctctctagcttcttgaaatcgattctttccaccgcagaagtacatatcatccaattgtctcttttacccctgaatct 52736242  T
Q  124 tattacttcctttcacatacctttttatatttgaca 159  Q
     || | || |||||| ||||||||||| ||||||||    
T  52736243 catcagtttctttcatatacctttttaaatttgaca 52736278  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 53567405 - 53567526
Alignment:
Q  29 gattcttggagaagctgctctccctaacttcttggaatcgagtttatcaaaagcagaagtacatataacc-atttgtctcttttacccttgaatcttatt 127  Q
    ||||||| ||||||||||| | |||| ||||||| |||||||||| ||||   | ||||||||||  ||| ||||||||||||| ||||||| ||| ||     
T  53567405 gattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttgcccttgagtctcatc 53567504  T
Q  128 acttcctttcacataccttttt 149  Q
    ||||| |||||||| |||||||    
T  53567505 acttcatttcacatcccttttt 53567526  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 33989681 - 33989748
Alignment:
Q  97 ccatttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttgacatatcc 164  Q
    |||||||||||||||||| |||||| |||| |||| |||| |||| ||||||||||||||||| ||||    
T  33989681 ccatttgtctcttttacctttgaattttatcactttcttttacattcctttttatatttgacaaatcc 33989748  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 42643795 - 42643853
Alignment:
Q  99 atttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttga 157  Q
    |||||||||||||  |||||||||  || | ||||||||||||| ||||||||||||||    
T  42643795 atttgtctcttttgtccttgaatcacatcaattcctttcacatatctttttatatttga 42643853  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 7765970 - 7765903
Alignment:
Q  97 ccatttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttgacatatcc 164  Q
    ||||||||||||||||||||||||||| || |||| |||||||||| ||||||| |||||||| ||||    
T  7765970 ccatttgtctcttttacccttgaatctcatcactttctttcacatatctttttaaatttgacaaatcc 7765903  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 4227883 - 4228009
Alignment:
Q  38 agaagctgctctccctaacttcttggaatcgagtttatcaaaagcagaagtacatataaccatttgtctcttttacccttgaatcttattacttcctttc 137  Q
    |||||||||| |||||| ||| ||||||||||||||  | |  |   |||||||||   ||||||||||||||||||||||||||| || ||||  ||||    
T  4227883 agaagctgctttccctagctttttggaatcgagtttccctaccgtgaaagtacatagccccatttgtctcttttacccttgaatctcatcactttttttc 4227982  T
Q  138 acatacctttttatatttgacatatcc 164  Q
    ||||| || ||||||||||||| ||||    
T  4227983 acatatctgtttatatttgacaaatcc 4228009  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 38493745 - 38493807
Alignment:
Q  97 ccatttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttgaca 159  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  38493745 ccatttgtctcttttacccttgaatctcaacacttcctttcacataccttttcaaatttgaca 38493807  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 45822467 - 45822528
Alignment:
Q  98 catttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttgaca 159  Q
    |||||||||||| ||||||| |||||||| |||| |||||| ||  || |||||||||||||    
T  45822467 catttgtctcttctacccttaaatcttatcactttctttcaaatttctgtttatatttgaca 45822528  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 42771343 - 42771217
Alignment:
Q  38 agaagctgctctccctaacttcttggaatcgagtttatcaaaagcagaagtacatataaccatttgtctcttttacccttgaatcttattacttcctttc 137  Q
    ||||||||||||||||| ||| |||||||| |||||  | |  |   |||||||||   ||||||||||||||||||||||||||| || ||||  ||||    
T  42771343 agaagctgctctccctagctttttggaatctagtttccctaccgtgaaagtacatagtcccatttgtctcttttacccttgaatctcatcactttttttc 42771244  T
Q  138 acatacctttttatatttgacatatcc 164  Q
    ||||| || ||||||||||||| ||||    
T  42771243 acatatctgtttatatttgacaaatcc 42771217  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 1594147 - 1594090
Alignment:
Q  100 tttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttga 157  Q
    |||||| ||||| ||||||||||| || ||||||||||||| ||||||||||||||||    
T  1594147 tttgtcccttttgcccttgaatctcatcacttcctttcacaaacctttttatatttga 1594090  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 5834501 - 5834549
Alignment:
Q  23 aaaatcgattcttggagaagctgctctccctaacttcttggaatcgagt 71  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  5834501 aaaatcgattcttatagaagctgctctccctagcttcttggaatcgagt 5834549  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 20231506 - 20231569
Alignment:
Q  96 accatttgtctcttttacccttgaatcttattacttcctttcacatacctttttatatttgaca 159  Q
    ||||||||||| |||| ||||||| ||| || | ||||||||||||| || |||||||||||||    
T  20231506 accatttgtctattttgcccttgagtctcatcagttcctttcacataactctttatatttgaca 20231569  T

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