View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_5 (Length: 545)
Name: NF1841_low_5
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 11558968 - 11558529
Alignment:
| Q |
17 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgattggtccccatg |
116 |
Q |
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|||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
11558968 |
caattggagcatatataacatatgaccccacggatgatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgactggtccatatg |
11558869 |
T |
|
| Q |
117 |
nnnnnnnnttggaatcaatataattaattataagtgattggatgttgtatactataccgaataaattctagggtttaagagttgtcatcattttatatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11558868 |
aaaaaaaattggaatcaatataattaattataagtgattggatgttatatactataccgaataaactctagggtttaagagttgtcatcattttatatac |
11558769 |
T |
|
| Q |
217 |
acaattgaagcataaattttaaagaaatggtaaataccttaataactgaaatgcaattgccatgataaggtccatttgaaatgtgtgcgatttcatgcat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
11558768 |
acaattgaagcataaattttaaagaaatggtaaataccttaataactgaaatgcagttgccatgatagggtccatttgaaatgtgtgcaatttcatgcat |
11558669 |
T |
|
| Q |
317 |
tggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaa-ccattaacaattatgtgaactcaaaatcaaactatcaattaaattag |
415 |
Q |
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||||||||||||||||||||||| |||||| || |||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
11558668 |
tggatttccacaagaaagaccattccactataacaaaattattaacaagtaacccgttaataattatgtgaactcaaaattaaactatcaattaaattag |
11558569 |
T |
|
| Q |
416 |
agtcattcaaagaaaattatagagtaaacaatcatttggtc |
456 |
Q |
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| T |
11558568 |
agtcattcaaa-taaattatatagtaaataattattgggtc |
11558529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 179 - 541
Target Start/End: Complemental strand, 11545345 - 11544982
Alignment:
| Q |
179 |
aaattctagggtttaagagttgtcatcattttatatatacaattgaagcataaattttaaa-gaaatggtaaataccttaataactgaaatgcaattgcc |
277 |
Q |
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||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
11545345 |
aaattctagggcataggagttgtcataattttatatacacaattgaagcataaattttaaaagaaatggtaaataccttgataattgaaatgcaattgcc |
11545246 |
T |
|
| Q |
278 |
atgataaggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaaccattaaca |
377 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545245 |
atgataaggtccatttgaaatgtgtgcaatttcatgcattggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaaccattaaca |
11545146 |
T |
|
| Q |
378 |
attatgtgaactcaaaatcaaactatcaattaaattagagtcattcaaagaaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactata |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545145 |
attatgtgaactcaaaatcaaactatcaattaaattagagtcattcaaataaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactata |
11545046 |
T |
|
| Q |
478 |
gaagcatgcatcttttatctgaaaattttgaaaaatgaaacacacattcaaagaataatctacc |
541 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |
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|
| T |
11545045 |
gaagcatgcatcttttatctgaaaattttgtaaaatgaaacacacattcaaagaagaaactacc |
11544982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 11545488 - 11545424
Alignment:
| Q |
52 |
gatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgattggtccccatg |
116 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||| |
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| T |
11545488 |
gatgtgaaactttcttgtagaatcatcatttgcctttgagtagggatgaatggctggtccacatg |
11545424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 11545410 - 11545372
Alignment:
| Q |
145 |
tataagtgattggatgttgtatactataccgaataaatt |
183 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
11545410 |
tataagtaattggatgttgtatactataccgaataaatt |
11545372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11545322 - 11545294
Alignment:
| Q |
1 |
cataattttatatacacaattgaagcata |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11545322 |
cataattttatatacacaattgaagcata |
11545294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 12064103 - 12064194
Alignment:
| Q |
254 |
cttaataactgaaatgcaattgccatgataaggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccact |
345 |
Q |
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| T |
12064103 |
cttaataattgaaatgcagtttccatgatagggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccact |
12064194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 12064015 - 12064102
Alignment:
| Q |
17 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatga |
104 |
Q |
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|||||| ||||||||| | |||||||||||| | |||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
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| T |
12064015 |
caattggagcatatataatatatgaccccaccggagatgtgaaactttcctgcagaataaccatttgcctctgagtagggatgaatga |
12064102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 20916293 - 20916225
Alignment:
| Q |
17 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcc |
85 |
Q |
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|||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||| |
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| T |
20916293 |
caattgaagcatatataacatatgatcccacatgagatgtgaaactttcttgtagaatcatcatttgcc |
20916225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 20915807 - 20915875
Alignment:
| Q |
17 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcc |
85 |
Q |
| |
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|||||| ||||||||| |||||||| ||| | |||||||||||||| ||||||||||||||||||| |
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| T |
20915807 |
caattggagcatatataacatatgattccatatgagatgtgaaactttcctgtagaatcaccatttgcc |
20915875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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