View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1841_low_9 (Length: 458)
Name: NF1841_low_9
Description: NF1841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1841_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 16910763 - 16910333
Alignment:
| Q |
13 |
tcatttgcaacaaaagtgacagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatcatccaacggacaccccaaaata |
112 |
Q |
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| T |
16910763 |
tcatttgcaacaaaagtggcagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatcatccaagggacaccccaaaata |
16910664 |
T |
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| Q |
113 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaattctcgac |
212 |
Q |
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| T |
16910663 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaagtgtaaccgggtttgaaattcaaataaagttcaagtgtgaaattctcgac |
16910564 |
T |
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| Q |
213 |
attatgtgacatcgcatatttcatgaccatgtccacaagttcaggttcaacgcctccttcatttcttaaaacaatatcttgtaaagaaattgatttgtca |
312 |
Q |
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| T |
16910563 |
attatgtgacatagcatatttcatgaccgcgtccacaagtttaggttcaacgcctctttcatttcttaaaacaatatcttgtaaagaaattgatttgtca |
16910464 |
T |
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| Q |
313 |
cgatgagacagaactgaaaacacaaattgattataattcggtaagccacgagcgaatactgaattattcaatgcaagagtcgtgactcttcgccaaagtg |
412 |
Q |
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| T |
16910463 |
cgatgagacagaactgaaaacacaaattgattataattgggtaagccacgagcgaatactgaattattcaatgcaagagtagtgactcttcgccaaagtg |
16910364 |
T |
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| Q |
413 |
tcttccatctagtagacaatacacaagtttg |
443 |
Q |
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| T |
16910363 |
tcttccatctagtagacaatacacaagtttg |
16910333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 50790290 - 50790383
Alignment:
| Q |
113 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaatt |
206 |
Q |
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||||||| ||| ||||||||||| |||||||||||||||||| |||| |||||||| | || |||||| ||| || ||||||||| ||||| |
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| T |
50790290 |
aaagcttaagacatgtcaaagattgacaagaaaagatgctagggtgcaatgtgtaaccgcgcttaaaattcgaatcaacttcaagagttaaatt |
50790383 |
T |
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