View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18420_low_1 (Length: 393)
Name: NF18420_low_1
Description: NF18420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18420_low_1 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 380
Target Start/End: Complemental strand, 27430009 - 27429634
Alignment:
| Q |
14 |
atcagatacaaatatttctgccttttgaaatctgctttgatgaatctgactgattttgtctaattcttcttggttcaattcccaatcaaatatttcaatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430009 |
atcagatacaaatatttctgccttttgaaatctgctttgatgaatctgactgattttgtctaattcttcttggttcaattcccaatcaaatatttcaatg |
27429910 |
T |
|
| Q |
114 |
ttttgtttcatcctctccttgttgaagcttttcacaatgggaattgccccttgctggtatatccatcttagtgctatctgcataatatatgtcaatatta |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27429909 |
ttttgtttcatcctttccttgttgaagcttttcacaatgggaattgccccttgctggtatatccatcttagtgctatctgcataatatatgtcaatatta |
27429810 |
T |
|
| Q |
214 |
gaaatagactttctttcagtgtaacagtcatcttaatatagtagtagta---------gtatatgactttgataagtttcaactgttaaaagatatcaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27429809 |
gaaatagactttctttcagtgtaacagtcatctcaatatagtagtagtagtagtatatgtatatgactttgataagtttcaactgttaaaagatatcaaa |
27429710 |
T |
|
| Q |
305 |
tatagaaccatttatttattctcacctaacaatctaaggttttgaagagttggttcatgatgtgatattatattag |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27429709 |
tatagaaccatttatttattctcacctaacaatctaaggttttgaagagctggttcatgatgtgatattatattag |
27429634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 27441425 - 27441224
Alignment:
| Q |
14 |
atcagatacaaatatttctgccttttgaaatctgctttgatgaatctgactgattttgtctaattcttcttggttcaattcccaatcaaatatttcaatg |
113 |
Q |
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|||||||||||| |||||||||||| | | ||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27441425 |
atcagatacaaacatttctgcctttagcagtctgcattgaggaatctgattaattttgtctaattcttcttggttcaattcccaatcaaatatttcaatg |
27441326 |
T |
|
| Q |
114 |
ttttgtttcatcctctccttgttgaagcttttcacaatgggaattgccccttgctggtatatccatcttagtgctatctgcataatatatgtcaatatta |
213 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
27441325 |
ttttgtttcatcctctccttgttgaagctcttcacaatgggaattaccccttgctggtatatccatcttagtgctatctgtataatatttgtcaatatta |
27441226 |
T |
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| Q |
214 |
ga |
215 |
Q |
| |
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|| |
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| T |
27441225 |
ga |
27441224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 27444213 - 27444001
Alignment:
| Q |
14 |
atcagatacaaatatttctgccttttgaaatctgctttgatgaatctgactgattttgtctaattcttcttggttcaattcccaatcaaatatttcaatg |
113 |
Q |
| |
|
|||||||||||| |||||| ||||||| | ||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
27444213 |
atcagatacaaacatttctaccttttgcagtctgcattgcggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtg |
27444114 |
T |
|
| Q |
114 |
ttttgtttcatcctctccttgttgaagcttttcacaatgggaattgccccttgctggtatatccatcttagtgctatctgcataatatatgtcaatatta |
213 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
27444113 |
tttagtttcatcctttccttgttgaagcttttcacaatgggaattgccccttgctggtatatccatcttagtgctatctgcataatatatatccacatta |
27444014 |
T |
|
| Q |
214 |
gaaatagactttc |
226 |
Q |
| |
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||||||||||||| |
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| T |
27444013 |
gaaatagactttc |
27444001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 26910878 - 26911058
Alignment:
| Q |
15 |
tcagatacaaatatttctgccttttgaaatctgctttgatgaatctgactgattttgtctaattcttcttggttcaattcccaatcaaatatttcaatgt |
114 |
Q |
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||||||| ||| ||||||||||| | | ||||| ||| |||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||| || |
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| T |
26910878 |
tcagataaaaacatttctgccttgtatagtctgcattgtggaatcttattgattttgtccaattcttcttggttcaatttccaatcaaatatttcaaggt |
26910977 |
T |
|
| Q |
115 |
tttgtttcatcctctccttgttgaagcttttcacaatgggaattgccccttgctggtatatccatcttagtgctatctgca |
195 |
Q |
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|||||||||||||||| || ||||||||||||||||| | ||| |||||||| | ||||||||||||||||||||||| |
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| T |
26910978 |
tttgtttcatcctctctttcttgaagcttttcacaattacacttgtcccttgctcatgtatccatcttagtgctatctgca |
26911058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 27160064 - 27159989
Alignment:
| Q |
93 |
tcccaatcaaatatttcaatgttttgtttcatcctctccttgttgaagcttttcacaatgggaattgccccttgct |
168 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| ||||||||||||||||| |||||||| ||| | || ||||||| |
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| T |
27160064 |
tcccaatcaaatagttcaatattttttttcattctctccttgttgaagctcttcacaattggagtagcaccttgct |
27159989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 26934340 - 26934388
Alignment:
| Q |
97 |
aatcaaatatttcaatgttttgtttcatcctctccttgttgaagctttt |
145 |
Q |
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||||||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
26934340 |
aatcaaatatttcaaggttttgagtcatcctctccttgttaaagctttt |
26934388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 15687 - 15633
Alignment:
| Q |
95 |
ccaatcaaatatttcaatgttttgtttcatcctctccttgttgaagcttttcaca |
149 |
Q |
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||||||||||||||| |||||||| ||||| |||||||||||| |||| |||||| |
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| T |
15687 |
ccaatcaaatatttccatgttttgcttcattctctccttgttgtagctcttcaca |
15633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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