View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_12 (Length: 460)
Name: NF18421_high_12
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Complemental strand, 14872680 - 14872244
Alignment:
| Q |
14 |
caaagggaaaaaagaagtggaggcttgtatatatgtgtggcttcagtgcatacgcaaacttaccctccagaatatcttactctcaataaggccataagga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14872680 |
caaagggaaaaaagaagtggaggcttgtatatatgtgtggcttcagtgcatacgcaaacttaccctccagaatatcttactctcaataaggccataagga |
14872581 |
T |
|
| Q |
114 |
actggaccgaaccttctagagtcgtagctactaaatttgttatcaccctctacccaaacgtgaccctttggaacctatagaaagaaggaaggcacttaga |
213 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14872580 |
actggaccgaaacttctagagtcgtagctactaaatttgttatcaccctctacccaaacgtgaccctttggaacctatagaaagaaggaaggcacttaga |
14872481 |
T |
|
| Q |
214 |
aaacaaaatcactatacttcattcagtaaataaaaagacaattaaatgttaaactttaaaagcnnnnnnnnnnntgaagctcttcttaaaatggtgaagc |
313 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14872480 |
aaacaaaatcactatacttcattgagtaaataaaaagacaattaaatgttaaactttaaaagcaaaaaaaaatatgaagctcttcttaaaatggtgaagc |
14872381 |
T |
|
| Q |
314 |
caaaacagaagaagtcacttcaaactagtagtaaagcaaaacccataatcaaaatcataaaaatccactaaaaatggga------nnnnnnnnnnaacca |
407 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14872380 |
caaaacagaagaagtcacttcaaactagtagcaaagcaaaacccataatcaaaatcataaaaatccactaaaaatgggattttttttttttttttaacca |
14872281 |
T |
|
| Q |
408 |
gaaaatgaccataccacaactgtttcatgcttatagc |
444 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
14872280 |
gaaattgaccataccacaactgtttcatgcttatagc |
14872244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 14895545 - 14895288
Alignment:
| Q |
14 |
caaagggaaaaaagaagtggaggcttgtatatatgtgtggcttcagtgcatacgcaaacttaccctccagaatatcttactctcaataaggccataagga |
113 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| || ||||||||||||| |
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| T |
14895545 |
caaagggaaaaaagaagtagaggcttgtatatatgtgtggcttcggtgcatacacaaacttaccatccagaatatcttactcttaagaaggccataagga |
14895446 |
T |
|
| Q |
114 |
actggaccgaaccttctagagtcgtagctactaaatttgttatcaccctctacccaaacgtgaccctttggaacctatagaaagaaggaaggcacttaga |
213 |
Q |
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| T |
14895445 |
attggaccgaaacttctagagtcgtagctattaagtttgttatcaccctctacccaaacatgaccctttggaacctatagaaagaaggaaggcacttaga |
14895346 |
T |
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| Q |
214 |
aaacaaaatcactatacttcattcagtaaataaaaagacaattaaatgttaaacttta |
271 |
Q |
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| T |
14895345 |
aaacaaaatctctatacttcattcagtaaataaaaagacagtcaaatgttaaacttta |
14895288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 14898788 - 14898573
Alignment:
| Q |
23 |
aaaagaagtggaggcttgtatatatgtgtggcttcagtgcatacgcaaacttaccctccagaatatcttactctcaataaggccataaggaactggaccg |
122 |
Q |
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|||||||||||| ||||||||||||| |||| ||| |||||||| ||||||||| ||||||||||| ||| ||| ||||||||||||||||| |||||| |
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| T |
14898788 |
aaaagaagtggaagcttgtatatatgagtggattcggtgcatacacaaacttacattccagaatatcctaccctcgataaggccataaggaacaggaccg |
14898689 |
T |
|
| Q |
123 |
aaccttctagagtcgtagctactaaatttgttatcaccctctacccaaacgtgaccctttggaacctatagaaagaaggaaggcacttagaaaacaaaat |
222 |
Q |
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|| ||||||| |||| |||| | |||||||||||||||||||| |||| ||||||||||||||||||||| | ||||| ||| ||||||||| ||||| |
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| T |
14898688 |
aaatttctagaatcgttgctattttatttgttatcaccctctaccaaaacatgaccctttggaacctatagagaaaaggagggcccttagaaaataaaat |
14898589 |
T |
|
| Q |
223 |
cactatacttcattca |
238 |
Q |
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| T |
14898588 |
ctctataatccattca |
14898573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 14868708 - 14868458
Alignment:
| Q |
22 |
aaaaagaagtggaggcttgtatatatgtgtggcttcagtgcatacgcaaacttaccctccagaatatcttactctcaataaggccataaggaactggacc |
121 |
Q |
| |
|
|||||||||||| ||||| || ||| |||||||||||||| |||| || |||||| ||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
14868708 |
aaaaagaagtgggggcttttagataagtgtggcttcagtgtatacaaaatcttaccttccagaataacctactctcgataaggccataaggaactggacc |
14868609 |
T |
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| Q |
122 |
gaaccttctagagtcgtagctactaaatttgttatcaccctctacccaaacgtgaccctttggaacc-tatagaaagaaggaaggcacttagaaaacaaa |
220 |
Q |
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|| ||||||| |||| ||| || |||||||||||||||||| |||||| ||||||||||||||| || |||| || || | ||||||||||||| | |
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| T |
14868608 |
aaaatttctagaatcgttgcttttatatttgttatcaccctctatccaaacatgaccctttggaaccttaaagaaggagggcactcacttagaaaacaca |
14868509 |
T |
|
| Q |
221 |
atcactatacttcattcagtaaataaaaagacaattaaatgttaaacttta |
271 |
Q |
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|| ||||| | ||||||| |||||||||||| |||||||||||| |||| |
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| T |
14868508 |
atgtctataatccattcagcaaataaaaagacggttaaatgttaaatttta |
14868458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 14898576 - 14898519
Alignment:
| Q |
332 |
ttcaaactagtagtaaagcaaaacccataatcaaaatcataaaaatccactaaaaatg |
389 |
Q |
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|||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14898576 |
ttcaaattagtagcaaagcaaaacccataatcaaaatcacaaaaatccactaaaaatg |
14898519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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