View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_high_13 (Length: 456)

Name: NF18421_high_13
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_high_13
NF18421_high_13
[»] chr6 (6 HSPs)
chr6 (98-446)||(11307965-11308328)
chr6 (101-156)||(11314008-11314063)
chr6 (69-99)||(11308370-11308400)
chr6 (107-153)||(11589355-11589401)
chr6 (111-156)||(607830-607875)
chr6 (232-272)||(16125023-16125063)
[»] chr5 (3 HSPs)
chr5 (107-163)||(19986878-19986934)
chr5 (107-150)||(2807991-2808034)
chr5 (109-153)||(3959690-3959734)
[»] chr3 (7 HSPs)
chr3 (107-166)||(43020020-43020079)
chr3 (107-151)||(43021651-43021695)
chr3 (107-166)||(37521841-37521900)
chr3 (107-162)||(8237726-8237781)
chr3 (101-156)||(8993660-8993715)
chr3 (107-166)||(24515987-24516046)
chr3 (107-154)||(36656897-36656944)
[»] chr1 (8 HSPs)
chr1 (107-166)||(10765748-10765807)
chr1 (101-166)||(5493263-5493328)
chr1 (107-167)||(3346028-3346088)
chr1 (107-166)||(5494131-5494191)
chr1 (92-151)||(12214989-12215049)
chr1 (107-151)||(38832845-38832889)
chr1 (108-151)||(14230477-14230520)
chr1 (101-166)||(5489564-5489629)
[»] chr4 (6 HSPs)
chr4 (107-156)||(2215691-2215740)
chr4 (107-151)||(30925380-30925424)
chr4 (107-166)||(35603202-35603262)
chr4 (101-151)||(30926008-30926058)
chr4 (229-270)||(39054014-39054055)
chr4 (107-166)||(24549965-24550025)
[»] chr2 (5 HSPs)
chr2 (222-277)||(744537-744592)
chr2 (107-163)||(38564615-38564671)
chr2 (115-166)||(27530233-27530284)
chr2 (106-161)||(44021780-44021835)
chr2 (115-151)||(34061324-34061360)
[»] chr7 (2 HSPs)
chr7 (107-151)||(43071726-43071770)
chr7 (210-267)||(44406858-44406917)
[»] chr8 (3 HSPs)
chr8 (107-166)||(4047529-4047588)
chr8 (101-166)||(41829481-41829547)
chr8 (107-151)||(24409222-24409266)
[»] scaffold0443 (1 HSPs)
scaffold0443 (120-166)||(6564-6610)
[»] scaffold0486 (1 HSPs)
scaffold0486 (107-156)||(1519-1568)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 98 - 446
Target Start/End: Complemental strand, 11308328 - 11307965
Alignment:
Q  98 ggggtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat--ttaatctctcttttcgaacaaaatcaagt 195  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  11308328 ggggtagatttgctaacttactccttcgtgtttttaagtgggagtaagttagcaaccccttatatatatatttaatctctcttttcgaacaaaatcaagt 11308229  T
Q  196 agtttcatactctgg-------------tgagcttagctgttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacacttaaaa 282  Q
    | ||||||| ||||              | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  11308228 aatttcatattctgcatgaacgtcctgataaacttagctgttagttaggacaacgcataaaatatgcaaagtacgaggtttaaatcccgaacacttaaaa 11308129  T
Q  283 tattctgcatgaactacgacgactgaaaacaaaacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308128 tattctgcatgaactacgacgactgaaaacaaaacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcg 11308029  T
Q  383 agaaaaaccaccaataattttttcagtatcagtgaaggaaacagaagaaagcgttgttcctatg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308028 agaaaaaccaccaataattttttcagtatcagtgaaggaaacagaagaaagcgttgttcctatg 11307965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 11314008 - 11314063
Alignment:
Q  101 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 156  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  11314008 gtagacttgctaacttactctttcatatttttaggtgagagtaagttagcaacccc 11314063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 11308400 - 11308370
Alignment:
Q  69 ttacaattatgttcattcattaaactagtgg 99  Q
    |||||||||||||||||||||||||||||||    
T  11308400 ttacaattatgttcattcattaaactagtgg 11308370  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 11589355 - 11589401
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaac 153  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  11589355 ttgctaacttactccttcatgtttttaggtgggagtaagttaacaac 11589401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 607875 - 607830
Alignment:
Q  111 taacttactccttcatatttttaagtgagagtaagttagcaacccc 156  Q
    |||||||||| ||||  |||||| ||||||||||||||||||||||    
T  607875 taacttactctttcacgtttttaggtgagagtaagttagcaacccc 607830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 16125063 - 16125023
Alignment:
Q  232 acaacgcataaaatatgcaaagtacgaggttcaaatctcga 272  Q
    |||| |||||| ||||||||||| |||||||||||||||||    
T  16125063 acaatgcataatatatgcaaagtccgaggttcaaatctcga 16125023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 19986878 - 19986934
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatata 163  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||    
T  19986878 ttgctaacttactccttcatgtttttaggtgggagtaagttagcaaccccctatata 19986934  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 2808034 - 2807991
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagc 150  Q
    |||||||||||||||||| | |||||| ||||||||||||||||    
T  2808034 ttgctaacttactccttcgtgtttttaggtgagagtaagttagc 2807991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 3959690 - 3959734
Alignment:
Q  109 gctaacttactccttcatatttttaagtgagagtaagttagcaac 153  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||    
T  3959690 gctaacttactccttcatgttttttggtgggagtaagttagcaac 3959734  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 43020079 - 43020020
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||    
T  43020079 ttgctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 43020020  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 43021651 - 43021695
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  43021651 ttgctaacttactccttcatgtttttaagtgggagtaagttagca 43021695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 37521900 - 37521841
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    |||||||||||||||||||| |||||  ||| ||||||||||||| |||| |||||||||    
T  37521900 ttgctaacttactccttcatgtttttgggtgggagtaagttagcagccccatatatatat 37521841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 8237781 - 8237726
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatat 162  Q
    ||||||||||| ||||||||||||||| ||| |||||||||| || |||| |||||    
T  8237781 ttgctaacttattccttcatatttttaggtgggagtaagttaacagccccctatat 8237726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 8993715 - 8993660
Alignment:
Q  101 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 156  Q
    ||||| ||||||||||||||||||||  ||||   |||||||||||||||||||||    
T  8993715 gtagacttgctaacttactccttcatgattttggatgagagtaagttagcaacccc 8993660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 24516046 - 24515987
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    |||||||||  || ||||||||||||  ||| |||||||||||||||||| |||||||||    
T  24516046 ttgctaactcgcttcttcatatttttgggtgtgagtaagttagcaaccccatatatatat 24515987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 36656897 - 36656944
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacc 154  Q
    ||||||||||||| |||||| |||||| |||||||||||||| |||||    
T  36656897 ttgctaacttacttcttcatgtttttaggtgagagtaagttaacaacc 36656944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 10765807 - 10765748
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||    
T  10765807 ttgctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 10765748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 5493328 - 5493263
Alignment:
Q  101 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    ||||| ||||||||||||| ||||||||||||  ||  ||||||||||||| |||| |||||||||    
T  5493328 gtagacttgctaacttactgcttcatatttttgggttggagtaagttagcagccccatatatatat 5493263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 3346088 - 3346028
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatatt 167  Q
    |||||||||||||||||||| |||||| ||| || |||||||||| |||  ||||||||||    
T  3346088 ttgctaacttactccttcatgtttttaggtgggactaagttagcagccctctatatatatt 3346028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 5494131 - 5494191
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccct-tatatatat 166  Q
    |||||||||||||||||||| |||||  ||| || |||||||||||||||| |||||||||    
T  5494131 ttgctaacttactccttcatgtttttgggtgggaataagttagcaacccctatatatatat 5494191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 12215049 - 12214989
Alignment:
Q  92 actagtggg-gtagatttgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    ||||||||| ||||| ||||||||||||||| |||| ||||| |||| |||||||||||||    
T  12215049 actagtgggagtagagttgctaacttactccatcatgtttttgagtgggagtaagttagca 12214989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 38832889 - 38832845
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  38832889 ttgctaacttactccttcatgtttttaggtgggagtaagttagca 38832845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 14230477 - 14230520
Alignment:
Q  108 tgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||    
T  14230477 tgctaacttactccttcatatttttaattggtagtaagttagca 14230520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 5489629 - 5489564
Alignment:
Q  101 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    ||||| ||||||||||||||||||||||||||   |  ||||| ||||||| |||| |||||||||    
T  5489629 gtagacttgctaacttactccttcatatttttggattggagtaggttagcagccccctatatatat 5489564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 2215691 - 2215740
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 156  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  2215691 ttgctagcttactccttcgtatttttaggtgagagtaagttagcaacccc 2215740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 30925424 - 30925380
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  30925424 ttgctaacttactccttaatatttttaggtgggagtaagttagca 30925380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 35603202 - 35603262
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagc-aaccccttatatatat 166  Q
    |||||||||||||||||||| |||||  ||| |||||||||||| |||||| |||||||||    
T  35603202 ttgctaacttactccttcatgtttttgggtgggagtaagttagcaaaccccatatatatat 35603262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 30926008 - 30926058
Alignment:
Q  101 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    ||||| |||||||||||||||||||| ||||||  || |||||||||||||    
T  30926008 gtagacttgctaacttactccttcatgtttttagatgggagtaagttagca 30926058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 39054014 - 39054055
Alignment:
Q  229 aggacaacgcataaaatatgcaaagtacgaggttcaaatctc 270  Q
    |||| ||||||||||||||||||||| || ||||||||||||    
T  39054014 aggataacgcataaaatatgcaaagtccgcggttcaaatctc 39054055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 24549965 - 24550025
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccct-tatatatat 166  Q
    |||||||||||||| ||||| ||||| |||| || |||||||||| ||||| |||||||||    
T  24549965 ttgctaacttactcattcatgtttttgagtgggactaagttagcagcccctatatatatat 24550025  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 744537 - 744592
Alignment:
Q  222 gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacact 277  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||| |||| |||||    
T  744537 gttagttaggacaatgcataaaatatgcaaggtatgaggttcaaacctcggacact 744592  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 38564615 - 38564671
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatata 163  Q
    |||||||||||||||||||| |||||| |||  |||||||||||| |||| ||||||    
T  38564615 ttgctaacttactccttcatgtttttaggtggaagtaagttagcatccccctatata 38564671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 27530233 - 27530284
Alignment:
Q  115 ttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    |||||||||||| |||||  ||| |||||||||||||||||| |||||||||    
T  27530233 ttactccttcatgtttttgggtgggagtaagttagcaaccccatatatatat 27530284  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 44021780 - 44021835
Alignment:
Q  106 tttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttata 161  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||| |||| ||||    
T  44021780 tttgctaacttactccttcatatttttaggtgggtgtaagttggcagccccctata 44021835  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 34061360 - 34061324
Alignment:
Q  115 ttactccttcatatttttaagtgagagtaagttagca 151  Q
    |||||||||||||||||| |||| |||||||||||||    
T  34061360 ttactccttcatatttttcagtgtgagtaagttagca 34061324  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 43071726 - 43071770
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    |||||||||||||||||||| |||||  |||||||||||||||||    
T  43071726 ttgctaacttactccttcatgtttttgggtgagagtaagttagca 43071770  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 44406917 - 44406858
Alignment:
Q  210 gtgagcttagct--gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaat 267  Q
    ||||||||||||  ||| ||| |||||| ||||||||||||||| || ||||||||||||    
T  44406917 gtgagcttagctcagttggttgggacaatgcataaaatatgcaaggtccgaggttcaaat 44406858  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 4047588 - 4047529
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    |||||||||| | |||| ||||||||||||||| |||||||| || |||| |||||||||    
T  4047588 ttgctaacttgcaccttaatatttttaagtgagtgtaagttaacagccccatatatatat 4047529  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 41829481 - 41829547
Alignment:
Q  101 gtagatttgctaacttactccttcatattttt-aagtgagagtaagttagcaaccccttatatatat 166  Q
    ||||| |||||||||||||||||||| |||||   ||||||||||||||||| | || |||||||||    
T  41829481 gtagacttgctaacttactccttcatgtttttggggtgagagtaagttagcagctccctatatatat 41829547  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 24409266 - 24409222
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagca 151  Q
    |||||||||||||||||||| |||||  ||| |||||||||||||    
T  24409266 ttgctaacttactccttcatgtttttgggtgggagtaagttagca 24409222  T

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Target: scaffold0443 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 6564 - 6610
Alignment:
Q  120 ccttcatatttttaagtgagagtaagttagcaaccccttatatatat 166  Q
    ||||||| |||||  |||||||||||||||||||||| |||||||||    
T  6564 ccttcatgtttttttgtgagagtaagttagcaaccccctatatatat 6610  T

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Target: scaffold0486 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 1519 - 1568
Alignment:
Q  107 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 156  Q
    |||||||||||||||||||| |||||  ||| |||||||||||| |||||    
T  1519 ttgctaacttactccttcatctttttgggtgcgagtaagttagccacccc 1568  T

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