View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_14 (Length: 452)
Name: NF18421_high_14
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 19256428 - 19256849
Alignment:
| Q |
17 |
ttggtatattttatcttttatacctcatatagctt----gttattcaacaaaatgatcaaaccaaggtacttcctaatgatgcataatgtaacacaaatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19256428 |
ttggtatattttatcttttatacctcatatagcttgcttgttattcaacaaaatgatcaaaccaaggtacttcctaatgatgcataatgtaacacaaatt |
19256527 |
T |
|
| Q |
113 |
tacatttttaagaaaattaatattattattaaagtatacaaaaaattgtacctgtcaagttcagttcccatgctaattgccatacccttcaaatcaccca |
212 |
Q |
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| T |
19256528 |
tacatttttaagaaaattaatattattattaaagtatacaaaaaattgtacctgtcaagttcagttcccatactaattgccatacccttcaaatcaccca |
19256627 |
T |
|
| Q |
213 |
agatatcactgagctctgagagtccatcatcttgtttagccttttcatactgttttacaaacattacaatgagttgatcgaatgaaaatgtttattcaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||| |||| ||||||| ||||||| |
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| T |
19256628 |
agatatcactgagctctgagagtccatcatcttgtttagctttttcatactgttttacaaacataataataagttgatcaaatg-aaatgttaattcaat |
19256726 |
T |
|
| Q |
313 |
tcagagactaatatttcatacacataataattaattaagtacaagagtaaaaacacaatacatacgtcgattttctgataggcattgtcagattcattag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19256727 |
tcagagactaatatttcatacacataataattaattaagtacaagagtaaaaacacaatacatacgtcgattttctgataggcattgtcagattcattag |
19256826 |
T |
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| Q |
413 |
gaggtgttgtcggagcagaacgt |
435 |
Q |
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| T |
19256827 |
gaggtgttgtcggagcagaacgt |
19256849 |
T |
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