View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18421_high_15 (Length: 440)
Name: NF18421_high_15
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 4709249 - 4709509
Alignment:
| Q |
4 |
tgtgttttggcggtgttaacatttcactgggtgaccttatctacttcgaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709249 |
tgtgttttggcggtgttaacatttcactgggcgaccttatatacttcaaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
4709348 |
T |
|
| Q |
104 |
tttctccataggtatagcttttctatacctacgatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709349 |
tttctccataggtatagcttttctatacctactatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
4709448 |
T |
|
| Q |
204 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709449 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
4709509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 4709593 - 4709669
Alignment:
| Q |
347 |
aatattgacttgtttctttaaagttgtcccgtctnnnnnnn-caatcaacctaatctctccccaaaaatagaccatc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709593 |
aatattgacttgtttctttaaagttgtcccgtctaaaaaaaacaatcaacctaatctctccccaaaaatagaccatc |
4709669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University